View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14816_high_9 (Length: 256)
Name: NF14816_high_9
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 26121301 - 26121542
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26121301 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaacgattattgatatgagta |
26121400 |
T |
|
| Q |
101 |
gagaacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatg |
200 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26121401 |
gagaatgagagttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatg |
26121500 |
T |
|
| Q |
201 |
gtagttttgttttgttctggttatgtagggtttgattgaact |
242 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26121501 |
gtaattttgttttgttctggttatgtagggtttgattgaact |
26121542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26085437 - 26085661
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| || |||||||||||| |
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| T |
26085437 |
atagattgagaaacaaagaagtcattaggaaaatagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagta |
26085536 |
T |
|
| Q |
101 |
gagaacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatg |
200 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||||||| | |||| ||| |
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| T |
26085537 |
gagattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaga--------ttgaaatg |
26085628 |
T |
|
| Q |
201 |
gtagttttgttttgttctggttatgtagggttt |
233 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |
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| T |
26085629 |
gtagttttgttttgttctggttatatagggttt |
26085661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26111774 - 26111997
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
26111774 |
atagattgagaaacaaagaagtcattaggaaaaaagaaaactatgatgcatccaataagaactccaatgattacagtggtaatgatccttgatatgagta |
26111873 |
T |
|
| Q |
101 |
gagaacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatg |
200 |
Q |
| |
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|||| ||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||||||| | |||| ||| |
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| T |
26111874 |
gagattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaga--------ttgaaatg |
26111965 |
T |
|
| Q |
201 |
gtagttttgttttgttctggttatgtagggtt |
232 |
Q |
| |
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| |||||||||||||||||||||| ||||||| |
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|
| T |
26111966 |
gaagttttgttttgttctggttatatagggtt |
26111997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26056200 - 26056424
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagta |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
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| T |
26056200 |
atagactgagaaacaaagaagtctttaggaaaaaagaaaactatgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagta |
26056299 |
T |
|
| Q |
101 |
gagaacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatg |
200 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||||||| | |||| ||| |
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| T |
26056300 |
gagattgagggctgttcttcatcaagggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaga--------ttgaaatg |
26056391 |
T |
|
| Q |
201 |
gtagttttgttttgttctggttatgtagggttt |
233 |
Q |
| |
|
| |||||||||||||||||||||| |||||||| |
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| T |
26056392 |
gaagttttgttttgttctggttatatagggttt |
26056424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26067862 - 26068086
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagta |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
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| T |
26067862 |
atagactgagaaacaaagaagtctttaggaaaaaagaaaactatgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagta |
26067961 |
T |
|
| Q |
101 |
gagaacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatg |
200 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||||||| | |||| ||| |
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|
| T |
26067962 |
gagattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaga--------ttgaaatg |
26068053 |
T |
|
| Q |
201 |
gtagttttgttttgttctggttatgtagggttt |
233 |
Q |
| |
|
| |||||||||||||||||||||| |||||||| |
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| T |
26068054 |
gaagttttgttttgttctggttatatagggttt |
26068086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 26128731 - 26128951
Alignment:
| Q |
4 |
gattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagtagag |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| || |||||||||| |||||||| | |||||||||| |||||| || |||||||| ||||| |
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|
| T |
26128731 |
gattgagaagcaaagaagtcattaggaaaaaagaaaactatgatgcatccagtaagaactactatgattacagcggtaacaatctttgatatgcttagag |
26128830 |
T |
|
| Q |
104 |
aacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgagaatttgagatggta |
203 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||| |||| |||||| |
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|
| T |
26128831 |
aataagggttgttcttcatcaagggtccttctctttctctgtgctcaatcattgtatccaccaccacctcaaag------attgaga--ttgaaatggta |
26128922 |
T |
|
| Q |
204 |
gttttgttttgttctggttatgtagggtt |
232 |
Q |
| |
|
|| |||||| ||||||||||| ||||||| |
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|
| T |
26128923 |
gtattgtttagttctggttatatagggtt |
26128951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 26038295 - 26038484
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactccaatgattacagtggtaaccattattgatatgagta |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||| | ||||| ||||| || ||||| || ||| |
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|
| T |
26038295 |
atagattgagaaacaaagaagccattaggaaaaaagaaagctaagatgcatccaataagaacaccaattactacagcagtaacgatccttgatttgcgta |
26038394 |
T |
|
| Q |
101 |
gagaacgagggttgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactgatattgaga |
190 |
Q |
| |
|
||||| |||||||||| ||| ||| ||||||||||||||||| |||||||||||||| | ||||| |||||||||||||| ||||||| |
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|
| T |
26038395 |
gagaatgagggttgtttcgcattaagggtccttctctttctctgcgcccaatcattgtagctaccaccacctcaaagactgagattgaga |
26038484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 26065545 - 26065603
Alignment:
| Q |
6 |
ttgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaataagaactc |
64 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
26065545 |
ttgagaaacaaagaagtcattgggaaaaaagaaagctaagatgcatcctataagaactc |
26065603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 26120823 - 26120951
Alignment:
| Q |
48 |
gcatccaataagaactccaatgattacagtggtaaccattattgatatgagtagagaacgagggttgttcttcatcaagcgtccttctctttctctgagc |
147 |
Q |
| |
|
|||||||||||||||||| || | |||||||||| | || ||||| || ||||||| ||| ||||| | ||| ||| |||||||| ||||| || || |
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|
| T |
26120823 |
gcatccaataagaactccgattactacagtggtagcgatccttgatttgcgtagagattaaggattgttttgcattaagggtccttctatttctttgcgc |
26120922 |
T |
|
| Q |
148 |
ccaatcattgtatccaccactacctcaaa |
176 |
Q |
| |
|
|||||||||| || |||||| |||||||| |
|
|
| T |
26120923 |
ccaatcattgaatacaccaccacctcaaa |
26120951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26056644 - 26056612
Alignment:
| Q |
1 |
atagattgagaaacaaagaagtcattaggaaaa |
33 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
26056644 |
atagattgagaaacaaagatgtcattaggaaaa |
26056612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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