View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14816_low_13 (Length: 218)

Name: NF14816_low_13
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14816_low_13
NF14816_low_13
[»] chr4 (2 HSPs)
chr4 (1-148)||(35181759-35181907)
chr4 (154-203)||(35182103-35182152)
[»] chr2 (4 HSPs)
chr2 (1-140)||(2224049-2224190)
chr2 (1-140)||(27585451-27585592)
chr2 (157-203)||(27585208-27585254)
chr2 (157-203)||(2224385-2224431)
[»] scaffold0198 (2 HSPs)
scaffold0198 (1-140)||(18423-18564)
scaffold0198 (152-203)||(18760-18811)
[»] chr3 (4 HSPs)
chr3 (1-140)||(39491085-39491226)
chr3 (9-140)||(14959180-14959313)
chr3 (157-203)||(14959517-14959563)
chr3 (152-203)||(39491424-39491475)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 35181907 - 35181759
Alignment:
Q  1 aataaacgtgaatatgtgatagaaggt-actattgaatacgcaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgta 99  Q
    |||||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35181907 aataaaagtgaatatgtgatagaaggttactattgaatatacaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgta 35181808  T
Q  100 attcgtgatttattcttgaagttcttaatcgtgatatatagtagtgttg 148  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  35181807 attcgtgatttattcttaaagtttttaatcgtgatatatagcagtgttg 35181759  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 35182152 - 35182103
Alignment:
Q  154 gggaaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182152 gggaaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 35182103  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 2224190 - 2224049
Alignment:
Q  1 aataaacgtgaatatgtgatagaaggta--ctattgaatacgcaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgt 98  Q
    |||||| ||||||||||||||||||||   || ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  2224190 aataaaagtgaatatgtgatagaaggttaccttttgaatatgcactgattgattttcattttaatggtatttgaatggtcaaaaactatgaaatatatgt 2224091  T
Q  99 aattcgtgatttattcttgaagttcttaatcgtgatatatag 140  Q
     |||||||||||||||||||| |  ||||||||| |||||||    
T  2224090 gattcgtgatttattcttgaaatatttaatcgtggtatatag 2224049  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27585451 - 27585592
Alignment:
Q  1 aataaacgtgaatatgtgatagaaggta--ctattgaatacgcaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgt 98  Q
    |||||| ||||||||||||||||||||   || ||||||| ||| | ||||||||||||||||||| ||||||| ||||||||||||| |  ||||||||    
T  27585451 aataaaagtgaatatgtgatagaaggttaccttttgaatatgcagtaattgattttcattttaatgatatttgagtggttaaaaactatggaatatatgt 27585550  T
Q  99 aattcgtgatttattcttgaagttcttaatcgtgatatatag 140  Q
     ||||||||||||||||||||||  ||||| ||| |||||||    
T  27585551 gattcgtgatttattcttgaagtatttaattgtggtatatag 27585592  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 27585208 - 27585254
Alignment:
Q  157 aaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 203  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  27585208 aaatgcttaatctcatgaaaatattttcacaagaaatacacgaattg 27585254  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 2224431 - 2224385
Alignment:
Q  157 aaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 203  Q
    |||||||||||||||  |||||||||||| ||||||||||| |||||    
T  2224431 aaatgcttaatctcacaaaaatattttcatgagaaatacacaaattg 2224385  T

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Target: scaffold0198 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18564 - 18423
Alignment:
Q  1 aataaacgtgaatatgtgatagaaggta--ctattgaatacgcaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgt 98  Q
    |||||| ||||||||||||| ||||||   || ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  18564 aataaaagtgaatatgtgatggaaggttaccttttgaatatgcagtaattgattttcattttaatggtatttgagtggttaaaaactatgaaatatatgt 18465  T
Q  99 aattcgtgatttattcttgaagttcttaatcgtgatatatag 140  Q
     ||||||||||||||||||||||  ||||||||| |||||||    
T  18464 gattcgtgatttattcttgaagtatttaatcgtggtatatag 18423  T

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Target: scaffold0198; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 18811 - 18760
Alignment:
Q  152 aagggaaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 203  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  18811 aaggaaaatgcttaatctcacgaaaatattttcacgagaaatacacgaattg 18760  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 39491226 - 39491085
Alignment:
Q  1 aataaacgtgaatatgtgatagaaggta--ctattgaatacgcaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgt 98  Q
    |||||| ||||||||||||||||||||   || ||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||| |  ||||||||    
T  39491226 aataaaagtgaatatgtgatagaaggttaccttttgaatatgcagtgattgattttcattttaatgatatttgagtggttaaaaactatggaatatatgt 39491127  T
Q  99 aattcgtgatttattcttgaagttcttaatcgtgatatatag 140  Q
     ||||||||||||||||||||||  ||||||||| |||||||    
T  39491126 gattcgtgatttattcttgaagtatttaatcgtggtatatag 39491085  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 14959313 - 14959180
Alignment:
Q  9 tgaatatgtgatagaaggta--ctattgaatacgcaatgattgattttcattttaatggtatttgaatggttaaaaactaggagatatatgtaattcgtg 106  Q
    |||||||||||||||||||   || ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||| |  |||||||| |||||||    
T  14959313 tgaatatgtgatagaaggttaccttttgaatatgcagtaattgattttcattttaatggtatttgagtggttaaaaactatggaatatatgtgattcgtg 14959214  T
Q  107 atttattcttgaagttcttaatcgtgatatatag 140  Q
    |||||||||||||||  ||||||||| |||||||    
T  14959213 atttattcttgaagtatttaatcgtggtatatag 14959180  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 14959563 - 14959517
Alignment:
Q  157 aaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 203  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  14959563 aaatgcttaatctcacgaaaatattttcacgagaaatacacgaattg 14959517  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 39491475 - 39491424
Alignment:
Q  152 aagggaaatgcttaatctcaagaaaatattttcacgagaaatacacgaattg 203  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  39491475 aaggaaaatgcttaatctcacgaaaatattttcatgagaaatacacgaattg 39491424  T

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