View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14816_low_2 (Length: 636)
Name: NF14816_low_2
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 7e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 192 - 378
Target Start/End: Complemental strand, 32304870 - 32304684
Alignment:
| Q |
192 |
aaaggaagagattttatcaaagttaaatttagaaatttcaaccatgtctatccggtaagaattttaaatttcttcgtaacttttataatgtgaatctcaa |
291 |
Q |
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| T |
32304870 |
aaaggaagagattttatcaaagttaaatttagaaatttcaaccatgtctatccggtgagaattttaaatttcttcataacttttataatgtgaatctcaa |
32304771 |
T |
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| Q |
292 |
attggctatatatttcaaaacattatgcattagtcccggtttatttttcgctaattgattataatgtttttagaatttttgaaaatc |
378 |
Q |
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| T |
32304770 |
attggctatatatttcaaaacattatgcattaatcccggtttatttttcgctaattgattataatgtttttagaatttttgaaaatc |
32304684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 32305048 - 32304939
Alignment:
| Q |
14 |
attattctcttagtgggaaacttgtcaatattatgcttttacttttgttattttgtactcactccatccctaaaataaaatttgtctttaaacgtgtgtt |
113 |
Q |
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| T |
32305048 |
attattctcttagtgggaaacttgtcaatattatgcttttacttttgttattttgtactcactccatccctaaaataaaatttgtctttaaacgtgtgtt |
32304949 |
T |
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| Q |
114 |
tgatgagaga |
123 |
Q |
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| T |
32304948 |
tgatgagaga |
32304939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 620
Target Start/End: Complemental strand, 32304616 - 32304584
Alignment:
| Q |
588 |
agtttggtttatgaaggtgacatgattaacttg |
620 |
Q |
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| T |
32304616 |
agtttggtttatgaaggtgacatgatcaacttg |
32304584 |
T |
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