View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14816_low_6 (Length: 431)
Name: NF14816_low_6
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 12498357 - 12498762
Alignment:
| Q |
18 |
aaaagtcccatatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtccaacgtgacgaactttatcatctatctagatgagtctgta |
117 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12498357 |
aaaagtctcgtatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtccaacgtgacgaactttatcatctatctagatgagtctgta |
12498456 |
T |
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| Q |
118 |
gagtaggaaagacatttgagtttaacaagatatacagtactgatgcaaatattggacatgataccgacattcatatgtaaacaacaataaattaattatt |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12498457 |
gagtaggaaagacatttgagtttaacaagatatgcagtactgatgcaaatattggacatgataccgacatttatatgtaaacaacaataaattaattatt |
12498556 |
T |
|
| Q |
218 |
tgagaaaatggaactgatcgaaacaatatgtgtcagtgtcgtgttcgttttaaaaagtatttaatttggattcttattgaaaacttttaatggaccagta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12498557 |
tgagaaaatggaactgatcgaaacaatatgtgtcagtgtcgtgttcgttttaaaaagtatttaatttggattcttattgaaaacatttaatggaccagta |
12498656 |
T |
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| Q |
318 |
agggtgcaacttcatcaaggaatttcataaaagctatttagctacaacacccaagagtaaaatctgtaaataattataatgatgcaaatccgatttggat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
12498657 |
agggtgcaacttcatcaaggaatttcataaaagctatttagctacaacacccaagagtaaaagctgtaaataattatgttgatgcaaatccgatttggat |
12498756 |
T |
|
| Q |
418 |
gatgat |
423 |
Q |
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|||||| |
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| T |
12498757 |
gatgat |
12498762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 28 - 423
Target Start/End: Original strand, 12582465 - 12582859
Alignment:
| Q |
28 |
tatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtccaacgtgacgaactttatcatctatctagatgagtctgtagagtaggaaa |
127 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
12582465 |
tatgatatgatgtatttcataatgcacaaagagcaaataattgaaaagtccaacgtgacaaactttattatctatccagatgagtctgtagagtaggaaa |
12582564 |
T |
|
| Q |
128 |
gacatttgagtttaacaagatatacagtactgatgcaaatattggacatgataccgacattcatatgtaaacaacaataaattaattatttgagaaaatg |
227 |
Q |
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|||||||||||||| |||||||| || ||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
12582565 |
gacatttgagtttagcaagatatgcaatacgagtgcagatattggacatgataccgacattcatatgtagtcaacagtaaattaattatttgagaaaatg |
12582664 |
T |
|
| Q |
228 |
gaactgatcgaaacaatatgtgtcagtgtcgtgttcgttttaaaaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtgcaac |
327 |
Q |
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| T |
12582665 |
gaactgatctaaacaatatgtgtcattgtc-tgttggttgtaagaagtatttaatttggattcttattgaaaatttttaatggaccagtaagggtacaac |
12582763 |
T |
|
| Q |
328 |
ttcatcaaggaatttcataaaagctatttagctacaacacccaagagtaaaatctgtaaataattataatgatgcaaatccgatttggatgatgat |
423 |
Q |
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||||| |||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| |||| ||||||||||| ||||||||||||||| |
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| T |
12582764 |
ttcattaaggaatttcataaaagctattcagctacagcacccaatagtaaaatatgtaaatatttatgttgatgcaaatctgatttggatgatgat |
12582859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 12522193 - 12522370
Alignment:
| Q |
18 |
aaaagtcccatatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtccaacgtgacgaactttatcatctatctagatgagtctgta |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12522193 |
aaaagtcccttatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtccaacgtgacgaactttatcatctatctagatgagtctgta |
12522292 |
T |
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| Q |
118 |
gagtaggaaagacatttgagtttaacaagatatacagtactgatgcaaatattggacatgataccgacattcatatgt |
195 |
Q |
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||||||||||||||||||||| || |||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
12522293 |
gagtaggaaagacatttgagtgtagcaagatatgcagtattgatgcaaatattggatatgataccgacattcatatgt |
12522370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 243 - 423
Target Start/End: Original strand, 12522365 - 12522544
Alignment:
| Q |
243 |
atatgtgtcagtgtcgtgttcgttttaaaaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtgcaacttcatcaaggaattt |
342 |
Q |
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|||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12522365 |
atatgtgtcagtgttgtattcgttttaagaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtgcaacttcatcaaggaattt |
12522464 |
T |
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| Q |
343 |
cataaaagctatttagctacaacacccaagagtaaaatctgtaaataattataatgatgcaaatccgatttggatgatgat |
423 |
Q |
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| T |
12522465 |
cataaaagctattcagctacaacacccaagagtaaaatctgtaaataa-tatgttgatggaaatccgatttggatgatgat |
12522544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 439778 - 439738
Alignment:
| Q |
282 |
tttggattcttattgaaaacttttaatggaccagtaagggt |
322 |
Q |
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||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
439778 |
tttggatccttatttaaaacttttaatggatcagtaagggt |
439738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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