View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14816_low_7 (Length: 403)
Name: NF14816_low_7
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Original strand, 42146567 - 42146945
Alignment:
| Q |
10 |
aagaatatctaaaacaccaatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgac |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42146567 |
aagaaaatctaaaacaccaatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgac |
42146666 |
T |
|
| Q |
110 |
aatcttaaggatgctatccaacaagagttttttgtcatgaaaaccaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42146667 |
aatcttaaggatgctatccaacaagagttttttgtcatgaaaaccaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgt |
42146766 |
T |
|
| Q |
210 |
tttattacaccttttctcattctctcaaaagtaggcagccgctcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcactcc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42146767 |
tttattacaccttttctcattctctcaaaagtaggcagccgctcaatggctacccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcactcc |
42146866 |
T |
|
| Q |
310 |
gctcgaacacgtccggagcagctgctgtcactggccacatctcccggaaactccgacgactgcttgttgatattgtcac |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42146867 |
gctcgaacacgtccggagcagctgctgtcactggccacatctcccggaaactccgacgactgcttgttgatattgtcac |
42146945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 52 - 322
Target Start/End: Original strand, 42179878 - 42180148
Alignment:
| Q |
52 |
caaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatccaacaagagttttttgtcatgaaa |
151 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42179878 |
caaacctgtcttgtctgtctctaagttttcttagaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaagagttttttgtcatgtaa |
42179977 |
T |
|
| Q |
152 |
accaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacaccttttctcattctctcaaaagtaggcagccgc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
42179978 |
accaagtttcgcaacatcaacttcatcatgcccaacttttccattttcatcaacgtgtttcattacaccttttctcattctctctaaagtaggcaaccgc |
42180077 |
T |
|
| Q |
252 |
tcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcactccgctcgaacacgtc |
322 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42180078 |
tcaatggctgcccaggtgaggtgatactcgtcatcctcctgtgtgtgtcgatcactccgctcgaacacgtc |
42180148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 42158880 - 42159174
Alignment:
| Q |
28 |
aatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatc |
127 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
42158880 |
aatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatc |
42158979 |
T |
|
| Q |
128 |
caacaagagttttttgtcatgaaaaccaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacaccttttctc |
227 |
Q |
| |
|
|||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || || | ||||||||||||| |
|
|
| T |
42158980 |
caacaagatcttcttatcatgtaaaccaagtttagcaacatcaacttcatcatgcacaacttttccattttcaccaacatgcttcactacaccttttctc |
42159079 |
T |
|
| Q |
228 |
attctctcaaaagtaggcagccgctcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcactccgctcgaacacgtc |
322 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
42159080 |
atacgctcaaaagtaggcaaccgctcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgccgatcacttcgctcaaacacgtc |
42159174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University