View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14816_low_9 (Length: 324)
Name: NF14816_low_9
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 3950981 - 3950690
Alignment:
| Q |
17 |
atgaaaagaaaatatcacaagaaattaaattaatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaact |
116 |
Q |
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| T |
3950981 |
atgaaaagaaaatatcacaaaaaattaaattaacggtcatagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaact |
3950882 |
T |
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| Q |
117 |
ttctcccatattgaagaagcaatgtcattgacctttctctccaactcatacacattcaccctccagcaaagcattggatttgtatattagacaaatatta |
216 |
Q |
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| T |
3950881 |
ttctcccatattgaagaagcaatgtcattgacctttctctccaactcatacacattcaccctccagcaaagcattggatttgtatattagacaaatatta |
3950782 |
T |
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| Q |
217 |
atttcatcattattcaggtataaaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatc |
308 |
Q |
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| T |
3950781 |
atctcatcattattcaggtataaaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatc |
3950690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 4215919 - 4216023
Alignment:
| Q |
47 |
taatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattg |
146 |
Q |
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||||||| ||||| |||||||||| || | || ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
4215919 |
taatggtgatagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatgtcattg |
4216018 |
T |
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| Q |
147 |
acctt |
151 |
Q |
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| T |
4216019 |
acctt |
4216023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 3796807 - 3796899
Alignment:
| Q |
59 |
caataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
151 |
Q |
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| T |
3796807 |
caataagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgacctt |
3796899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 4014324 - 4014408
Alignment:
| Q |
67 |
aagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
151 |
Q |
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| T |
4014324 |
aagcaatttcaaaccttcaatgctttagctgctatagatctgattcaagtttctctcatatgaaagaagtaatgtcattgacctt |
4014408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 4027923 - 4027999
Alignment:
| Q |
43 |
aaattaatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttc |
119 |
Q |
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| T |
4027923 |
aaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc |
4027999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
| Q |
67 |
aagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatat |
127 |
Q |
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| T |
3961159 |
aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat |
3961099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 4028044 - 4028182
Alignment:
| Q |
164 |
atacacattcaccctccagcaaagcattggatttgtatattag---acaaatattaatttcatcattattcaggtataaaatagcaggggcaaaagttga |
260 |
Q |
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|||||||||||| |||| || |||||| ||| ||||||||| | |||||||||| ||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
4028044 |
atacacattcacactcccacagagcattagatctgtatattattaaaaaaatattaatgtcaccattatttaaatataaaatagcaggggcaaacgttga |
4028143 |
T |
|
| Q |
261 |
cttgccaaacagtacacatgctggaaatatctgtatgaa |
299 |
Q |
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|||| |||| | ||||||||||| |||||||||||| |
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| T |
4028144 |
gttgcttaacaatttacatgctggaattatctgtatgaa |
4028182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 4221238 - 4221287
Alignment:
| Q |
67 |
aagcaatttctgaccttcaatgctttggctgctagagatctgattcaact |
116 |
Q |
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|||||||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
4221238 |
aagcaattactgaccttaaatgctttgtttgctagagatctgattcaact |
4221287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 3822703 - 3822754
Alignment:
| Q |
65 |
gaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaact |
116 |
Q |
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||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
3822703 |
gaaagaaattactgaccttaaatgctttgtttgctagagatctgattcaact |
3822754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 3796915 - 3796952
Alignment:
| Q |
159 |
aactcatacacattcaccctccagcaaagcattggatt |
196 |
Q |
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| T |
3796915 |
aactcatacacattcaccttcctgcaaagcattggatt |
3796952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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