View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14817_high_1 (Length: 673)
Name: NF14817_high_1
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 106 - 655
Target Start/End: Original strand, 34952499 - 34953046
Alignment:
| Q |
106 |
acaaattatgcacttatggtagtgaactagtaaatccaaagatatatatgtttttctttttctttcatggttaaaatatctctctaaagaggcattttgc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34952499 |
acaaattatgcacttatggtagtgaactagtaaatccaaagatatatatgtttttctttttctttcatggttaaaatatctctctaaagaggcattttgc |
34952598 |
T |
|
| Q |
206 |
nnnnnnn-acttgagtaattatggttgggaactatatttgnnnnnnnnnnnacttgaatttatgaaat-atggtagtatttatctaaagagacattttgc |
303 |
Q |
| |
|
|||||||| ||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34952599 |
ttttttttacttgagttattatggctgtgaactatatttgtcttttttg---cttgaatttatgaaattatggtagtatttatctaaagagacattttgc |
34952695 |
T |
|
| Q |
304 |
ttttatctaaagattccttttagtcctttatattttataaattatatataatatacaaatgaatcatttgattttctccaacatcttgtatgtactataa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34952696 |
ttttatctaaagattccttttagtcctttatattttataaattatatataatatacaaatgaatcatttgattttctccaacatcttgtatgtactataa |
34952795 |
T |
|
| Q |
404 |
tttatacaaataactcataattgtctacatgatgttgaggaagaccataaggactcatttgtacaagacactaaaatgaatcttttgattatatnnnnnn |
503 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34952796 |
tctatacaaataactcataattgtctacatgatgttgaggaagaccataaggactcatttgtacaagacactaaaatgaatcttttgattatat-aaaaa |
34952894 |
T |
|
| Q |
504 |
nnttaattttttgaacgatgaaagacgaaaatgaacattgaataacagataaaggatcaaaacggttttttagcctaatttatttattcacaattaagat |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34952895 |
aattaattttttgaacgatgaaagacgaaaatgaacattgaataaaagataaaggatcaaaagaattttttagcctaatttatttattcacaattaagat |
34952994 |
T |
|
| Q |
604 |
tactttattttctcctttaaagtgaattgtttcttttataagaagtaatcct |
655 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34952995 |
tactttattttttcctttaaagtgaattgtttcttttataagaagcaatcct |
34953046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University