View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_high_4 (Length: 458)
Name: NF14817_high_4
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 24 - 452
Target Start/End: Complemental strand, 45321749 - 45321321
Alignment:
| Q |
24 |
ggcgaggcagaagcattagtcttgatacgggtacacgacagtctgttgatagcttctcaaataattgaagcttttatttcagataattcagagcaaaatg |
123 |
Q |
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| T |
45321749 |
ggcgaggcagaagcattagtcttgatacgggtacacgacagtctgtcgatagcttctcaaataattgaagcttttatttcagataattcagagcaaaatg |
45321650 |
T |
|
| Q |
124 |
cacaaactgacttcttcactccacctagaagtgggcctagtaaaggcaggaaatcagtaagaaagcgcaagtcatagtcaaaagcagttacggcaattta |
223 |
Q |
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| T |
45321649 |
cacaaactgacttcttcactccacctagaagtgggcctagtaaaggcaggaaatcagtaagaaagcgcaagtcattgtcaaaaccagttacagcaattta |
45321550 |
T |
|
| Q |
224 |
tacaattgggtcttcagttattgtctgcccatgtgctgatataagcactgtaacttcattattgcacactatcatcacttccgggagatctgtcccgaaa |
323 |
Q |
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| T |
45321549 |
tacaattgggtctttagttattgtctgcccatgtgctgatataagcactgtaacttcattattgcacactatcatcacttccgggagatctgtcccgaaa |
45321450 |
T |
|
| Q |
324 |
gtaagtaagctacccagccctgcaatctctctacaacaagaagccccttcattttatattcaagggtggctgaccatgggaaaactttgccttgctgatg |
423 |
Q |
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| T |
45321449 |
gtaagtaagctaccctgccccacaatctctctacaacaagaagccccttcattttatattcaagggtggctgaccatgggaaaactttgccttgctgatg |
45321350 |
T |
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| Q |
424 |
ggaagcttgcaaagaactatattcctttg |
452 |
Q |
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| T |
45321349 |
ggaagcttgcaaagaactatattcctttg |
45321321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 74 - 449
Target Start/End: Complemental strand, 14236779 - 14236404
Alignment:
| Q |
74 |
agcttctcaaataattgaagcttttatttcagataattcagagcaaaatgcacaaactgacttcttcactccacctagaagtgggcctagtaaaggcagg |
173 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
14236779 |
agcttctcaaataatagaaacttttatttcagataattcagagcaaaatgcagaaactgacttcttcactccacctagaagtgggccaagtaaaggtcgg |
14236680 |
T |
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| Q |
174 |
aaatcagtaagaaagcgcaagtcatagtcaaaagcagttacggcaatttatacaattgggtcttcagttattgtctgcccatgtgctgatataagcactg |
273 |
Q |
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|| |||| ||||||||||||||||| |||||||||| |||| || ||||||||||||||||||| | ||||||| ||||| | ||||||||| || || |
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| T |
14236679 |
aagtcaggaagaaagcgcaagtcattgtcaaaagcaattactgctatttatacaattgggtctttaattattgtttgcccgtctgctgatatgagtgcta |
14236580 |
T |
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| Q |
274 |
taacttcattattgcacactatcatcacttccgggagatctgtcccgaaagtaagtaagctacccagccctgcaatctctctacaacaagaagccccttc |
373 |
Q |
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| T |
14236579 |
taattccattattgcacactatcatcacctctgggaattctgacccaaaattaaataagctactcggccctgcaacctctctacaacaagaatctccttc |
14236480 |
T |
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| Q |
374 |
attttatattcaagggtggctgaccatgggaaaactttgccttgctgatgggaagcttgcaaagaactatattcct |
449 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
14236479 |
tttttatattcaagggtggctgaccatgggcaaactttgtcttgctgatggaaagcttgcaaagaactacattcct |
14236404 |
T |
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