View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_high_5 (Length: 364)
Name: NF14817_high_5
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 152 - 340
Target Start/End: Complemental strand, 53479775 - 53479587
Alignment:
| Q |
152 |
ctcttttcacatagcagcaacgtgtcatcagcaaactctaataggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
251 |
Q |
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| T |
53479775 |
ctcttttctcatagcagcaacgtgccatcagcaaactctaaaaggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
53479676 |
T |
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| Q |
252 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaatgatctccttgccttaactcccaagcatt |
340 |
Q |
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| T |
53479675 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaatgatctccttgccttaactctcaagcatt |
53479587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 53480019 - 53479895
Alignment:
| Q |
20 |
ctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacggttaaaaattgacagcctacttggattatctccaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53480019 |
ctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacggttaaaaattgacagcctacttggattatctccaat |
53479920 |
T |
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| Q |
120 |
tgacaaacacaaatacttaaatggg |
144 |
Q |
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| T |
53479919 |
tgacaaacacaaatacttaaatggg |
53479895 |
T |
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