View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14817_high_6 (Length: 352)

Name: NF14817_high_6
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14817_high_6
NF14817_high_6
[»] chr4 (8 HSPs)
chr4 (95-352)||(42754498-42754754)
chr4 (95-352)||(42745138-42745394)
chr4 (113-352)||(42732809-42733053)
chr4 (96-222)||(42764317-42764443)
chr4 (114-221)||(42719915-42720022)
chr4 (299-352)||(42720114-42720167)
chr4 (239-340)||(42764473-42764574)
chr4 (135-222)||(42771673-42771760)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 95 - 352
Target Start/End: Original strand, 42754498 - 42754754
Alignment:
Q  95 gtaagaattaaatcaaaactacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccgttaatatatctattatacgagtaaaat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  42754498 gtaagaattaaatcaaaactacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccattaatgtatctattataagagtaaaat 42754597  T
Q  195 attgcttctttggccttctcggtgctgtataacnnnnnnnnnnntatcattatttcataatttaattgaccaaataattttatgcattttggagattgaa 294  Q
    ||||||||||| ||||| |||||||||| ||||           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42754598 attgcttctttcgccttttcggtgctgtgtaac-aaaaaaaatatatcatcatttcataatttaattgaccacataattttatgcattttggagattgaa 42754696  T
Q  295 ttttataccttccaaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42754697 ttttataccttccaaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 42754754  T

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Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 95 - 352
Target Start/End: Original strand, 42745138 - 42745394
Alignment:
Q  95 gtaagaattaaatcaaaactacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccgttaatatatctattatacgagtaaaat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  42745138 gtaagaattaaatcaaaactacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccattaatgtatctattataagagtaaaat 42745237  T
Q  195 attgcttctttggccttctcggtgctgtataacnnnnnnnnnnntatcattatttcataatttaattgaccaaataattttatgcattttggagattgaa 294  Q
    ||||||||||| ||||| |||||||||| ||||           |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  42745238 attgcttctttcgccttttcggtgctgtgtaac-aaaaaaaatatatcatcatttcataatttaattgaccacataattttctgcattttggagattgaa 42745336  T
Q  295 ttttataccttccaaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42745337 ttttataccttccaaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 42745394  T

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Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 113 - 352
Target Start/End: Complemental strand, 42733053 - 42732809
Alignment:
Q  113 ctacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccgttaatatatctattatacgagtaaaatattgcttctttggccttc 212  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||     
T  42733053 ctacatacttgcaagctttgctgcttcatcttcatcaagtattgcagcaaatccattaatatatctattataagagtaaaatattgcttctttggccttt 42732954  T
Q  213 tcggtgctgtataac-----nnnnnnnnnnntatcattatttcataatttaattgaccaaataattttatgcattttggagattgaattttataccttcc 307  Q
    || ||||||| ||||                |||| | ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  42732953 tcagtgctgtgtaacaacaacaaaaattaaatatcgtcatttcataatttaattgaccacattattttatgcattttggagaatgaattttataccttcc 42732854  T
Q  308 aaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 352  Q
    || |||||||||||| | ||| |||||||||||||||||||||||    
T  42732853 aacgtaagatccaagaatatcgtagtgagagtttgtggcagattc 42732809  T

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Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 42764317 - 42764443
Alignment:
Q  96 taagaattaaatcaaaactacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccgttaatatatctattatacgagtaaaata 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  42764317 taagaattaaatcaaaactacatacttgaaagctgagctgcttcttcttcatcaagtattgcagcaaatccattaatatatctattataagagtaaaata 42764416  T
Q  196 ttgcttctttggccttctcggtgctgt 222  Q
    |||||||||||||||||||||||||||    
T  42764417 ttgcttctttggccttctcggtgctgt 42764443  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 42719915 - 42720022
Alignment:
Q  114 tacatacttgaaagctgagctgcttcatcttcatcaagtattgcagcaaatccgttaatatatctattatacgagtaaaatattgcttctttggccttct 213  Q
    |||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||| | |||| || || |||||||||||||||||||||||||    
T  42719915 tacatacttgcaacctcagctgcttcatcttcatcaagtattgcagcaaagccgttaatatttttattgtaagaataaaatattgcttctttggccttct 42720014  T
Q  214 cggtgctg 221  Q
    | ||||||    
T  42720015 cagtgctg 42720022  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 42720114 - 42720167
Alignment:
Q  299 ataccttccaaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42720114 ataccttccaaggtaagatccaagtaaatcatagtgagagtttgtggcagattc 42720167  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 42764473 - 42764574
Alignment:
Q  239 tatcattatttcataatttaattgaccaaataattttatgcattttggagattgaattttataccttccaaggtaagatccaagtaaatcatagtgagag 338  Q
    |||||| ||||||| ||| |||| |||  ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| | ||||||||| |||    
T  42764473 tatcatcatttcatgattcaattaaccgcataattttatggattttggagattgaattttataccttccaacgtaagatgcaagaatatcatagtgggag 42764572  T
Q  339 tt 340  Q
    ||    
T  42764573 tt 42764574  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 42771673 - 42771760
Alignment:
Q  135 gcttcatcttcatcaagtattgcagcaaatccgttaatatatctattatacgagtaaaatattgcttctttggccttctcggtgctgt 222  Q
    ||||||||||||||||| | ||| || ||||| |||| |||| || |||| || ||||| ||||||||||||||||| || |||||||    
T  42771673 gcttcatcttcatcaagcactgcggcgaatccattaaaatatttactataagaataaaagattgcttctttggccttgtcagtgctgt 42771760  T

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