View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_low_10 (Length: 297)
Name: NF14817_low_10
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 25589129 - 25588853
Alignment:
| Q |
17 |
cttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacga |
116 |
Q |
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| T |
25589129 |
cttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacga |
25589030 |
T |
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| Q |
117 |
agaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589029 |
agaaggagcggcatggcctctgttgtgtcctggaaagtgaaagctggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggcca |
25588930 |
T |
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| Q |
217 |
ctctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactgtccctatgct |
293 |
Q |
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| T |
25588929 |
ctctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactgtcccaatgct |
25588853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 25598781 - 25598505
Alignment:
| Q |
17 |
cttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacga |
116 |
Q |
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| T |
25598781 |
cttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacga |
25598682 |
T |
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| Q |
117 |
agaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggcca |
216 |
Q |
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| T |
25598681 |
agaaggagcggcatggcctctgttgtgtcctggaaagtgaaagctggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggcca |
25598582 |
T |
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| Q |
217 |
ctctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactgtccctatgct |
293 |
Q |
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| T |
25598581 |
ctctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactgtcccaatgct |
25598505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 48465997 - 48465798
Alignment:
| Q |
28 |
ggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcgg |
127 |
Q |
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| T |
48465997 |
ggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaatcatgagcatattgtctta-tccaatgagttggatcaatgaagaaggagcgg |
48465899 |
T |
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| Q |
128 |
catggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaag |
227 |
Q |
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| T |
48465898 |
catggcctctgtcgtgtccaggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcagagactagaagaggttgggcactctgttgaag |
48465799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 25584288 - 25584062
Alignment:
| Q |
17 |
cttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatgctagac-aaatcatgagcatatggtcttactccaatgagttgagtcaacg |
115 |
Q |
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|||||||||| || ||||||||||| |||||||||||||| || |||| ||| | ||||||||| ||||||||||| |||||||||| |||||| || |
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| T |
25584288 |
cttctaatataggtccttggggacagaagaggttgtcaagttcaggaa-gctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcg |
25584190 |
T |
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| Q |
116 |
aagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggcc |
215 |
Q |
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| T |
25584189 |
aggcaggagcagcatggcctctgttatgtccaggaaagtgaaaagtagcagcattttcttcagctgaggctttcaatgcactgactaaaggaggtaggcc |
25584090 |
T |
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| Q |
216 |
actctgctgaagcactggtgaattgctg |
243 |
Q |
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| T |
25584089 |
actctgccgaatctctggtgaattgctg |
25584062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 42076773 - 42076584
Alignment:
| Q |
41 |
aaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgtt |
140 |
Q |
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| T |
42076773 |
aaaagaggttgacaagttccagaatgttgtacaaatcatgagcatatagtcttattccaatgagttgggtcaatgaagaaggagcggcatggcctctgtt |
42076674 |
T |
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| Q |
141 |
gtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcac--tgactagaggaggtaggccactctgctgaagc |
228 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| || |||||||||||||| |
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| T |
42076673 |
gtgtccacgaaagtgaaaactggcagcattttcttcaagtgaggctttcaatgcacagagactaaaggaggttgggcactctgctgaagc |
42076584 |
T |
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