View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14817_low_13 (Length: 253)

Name: NF14817_low_13
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14817_low_13
NF14817_low_13
[»] chr5 (1 HSPs)
chr5 (18-245)||(1437665-1437892)
[»] chr6 (7 HSPs)
chr6 (71-160)||(28088529-28088618)
chr6 (72-160)||(27998720-27998808)
chr6 (174-238)||(28069682-28069746)
chr6 (162-245)||(28030025-28030108)
chr6 (194-246)||(28014329-28014381)
chr6 (167-238)||(27910031-27910102)
chr6 (71-152)||(28069564-28069645)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 1437665 - 1437892
Alignment:
Q  18 ctttccatgatagcttatgaaaaacagcttataatgctaaccaatgttttgagcttcttgcagagggttaaccaatgtttgtgtgatgcctgccgtaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1437665 ctttccatgatagcttatgaaaaacagcttataatgctaaccaatgttttgagcttcttgcagagggttaaccaatgtttgcgtgatgcctgccgtaatg 1437764  T
Q  118 ctaatctaactagatgcatggaattgattgattgtaattctaatgctacatggaggaatgataagggtgccaatgattgtttgaattcctcatctggtgt 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1437765 ctaatctaactggatgcatggaattgattgattgtaattctaatgctacatggaggaatgataagggtgccaatgattgtttgaattcctcatctggtgt 1437864  T
Q  218 tttttcttatggaatctatgcctatgct 245  Q
    |||||||||||||||||||||| |||||    
T  1437865 tttttcttatggaatctatgccaatgct 1437892  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 28088529 - 28088618
Alignment:
Q  71 cttcttgcagagggttaaccaatgtttgtgtgatgcctgccgtaatgctaatctaactagatgcatggaattgattgattgtaattctaa 160  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||    
T  28088529 cttcttccagagggttaaccaatgtttgcgtgatgcctgccataatgctaaactacttggatgcatggaattgattgattgtaattctaa 28088618  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 27998720 - 27998808
Alignment:
Q  72 ttcttgcagagggttaaccaatgtttgtgtgatgcctgccgtaatgctaatctaactagatgcatggaattgattgattgtaattctaa 160  Q
    ||||| ||||||||||||||||||||| | |||||||||| | || ||||||||  | |||||||||| |||||||||||| |||||||    
T  27998720 ttcttccagagggttaaccaatgtttgcgagatgcctgccatcattctaatctacttggatgcatggacttgattgattgtgattctaa 27998808  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 28069682 - 28069746
Alignment:
Q  174 aatgataagggtgccaatgattgtttgaattcctcatctggtgttttttcttatggaatctatgc 238  Q
    ||||||||||||||||||| |||||| ||  || ||||||||| |||||||||||||||||||||    
T  28069682 aatgataagggtgccaatgcttgtttaaacgccacatctggtgctttttcttatggaatctatgc 28069746  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 28030025 - 28030108
Alignment:
Q  162 gctacatggaggaatgataagggtgccaatgattgtttgaattcctcatctggtgttttttcttatggaatctatgcctatgct 245  Q
    |||||||||||  |||||||||||||| ||| ||||||||||||| ||||||||| | ||  ||||||||| |||||| |||||    
T  28030025 gctacatggagtgatgataagggtgccgatgcttgtttgaattccacatctggtgctattaattatggaatatatgccaatgct 28030108  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 28014329 - 28014381
Alignment:
Q  194 ttgtttgaattcctcatctggtgttttttcttatggaatctatgcctatgcta 246  Q
    |||| ||||| || ||||||||| |||||||||||||||||||||| ||||||    
T  28014329 ttgtatgaatgccacatctggtgctttttcttatggaatctatgccaatgcta 28014381  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 27910031 - 27910102
Alignment:
Q  167 atggaggaatgataagggtgccaatgattgtttgaattcctcatctggtgttttttcttatggaatctatgc 238  Q
    |||||| || |||||||||||  ||| |||||| ||  || ||||||||| |||||||||||||||||||||    
T  27910031 atggagtaaagataagggtgctgatgcttgtttaaacgccacatctggtgctttttcttatggaatctatgc 27910102  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 28069564 - 28069645
Alignment:
Q  71 cttcttgcagagggttaaccaatgtttgtgtgatgcctgccgtaatgctaatctaactagatgcatggaattgattgattgt 152  Q
    |||||| |||||||||||||||||||||   |||||||||| |  | | ||| || || |||||||||| ||||||||||||    
T  28069564 cttcttccagagggttaaccaatgtttgcaagatgcctgccatcgttcgaatttacctggatgcatggacttgattgattgt 28069645  T

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