View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14817_low_14 (Length: 246)

Name: NF14817_low_14
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14817_low_14
NF14817_low_14
[»] chr4 (7 HSPs)
chr4 (51-246)||(42745401-42745586)
chr4 (82-246)||(42764593-42764758)
chr4 (51-246)||(42754761-42754947)
chr4 (190-246)||(42720174-42720230)
chr4 (189-246)||(42732745-42732802)
chr4 (1-30)||(42745603-42745632)
chr4 (1-30)||(42754964-42754993)
[»] chr5 (1 HSPs)
chr5 (196-236)||(37020334-37020374)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 42745586 - 42745401
Alignment:
Q  51 aaattaaaaatggtcacaaaatttctgccactgtagacaactcatggtattattaatctcgtgctcatcataatctaattttcatatttttaatgtttaa 150  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||              |||||||||||||||||||| ||||||| |||||||||    
T  42745586 aaattaaaaatggtcacaaaatttctgtcactgtagacaacttatggt--------------gctcatcataatctaatttttatatttt-aatgtttaa 42745502  T
Q  151 ctatttggtctaataatcaatcatg-----tgttcnnnnnnngttagtcctatattgtatacttgggatcacattctcatggtccaaatccttcatcatt 245  Q
    ||||||||||||||||||||||||      | ||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42745501 ctatttggtctaataatcaatcattgttttttttttttttttgttagtcctatattgtatacttaggatcacattctcatggtccaaatccttcatcatt 42745402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 42764758 - 42764593
Alignment:
Q  82 tgtagacaactcatggtattattaa-tctcgtgctcatcataatctaattttcatatttttaatgtttaactatttggtctaataatcaatcatgtg-tt 179  Q
    ||||||||||| ||| ||||||||| | || ||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||| ||    
T  42764758 tgtagacaacttatgatattattaaatttcatgctcatcataatctaattttcatatttt-aatgtttaaatatttggtttactaatcaatcatgtgttt 42764660  T
Q  180 cnnnnnnngttagtcctatattgtatacttgggatcacattctcatggtccaaatccttcatcattt 246  Q
            |||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||    
T  42764659 tttttttcgttagtcctatattgtatacttaggatcacattctttcggtccaaatccttcatcattt 42764593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 42754947 - 42754761
Alignment:
Q  51 aaattaaaaatggtcacaaaatttctgccactgtagacaactcatggtattattaatctcgtgctcatcataatctaattttcatatttttaatgtttaa 150  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||              |||||||||||||||||||| ||||||| |||||||||    
T  42754947 aaattaaaaatggtcacaaaatttctgtcactgtagacaacttatggt--------------gctcatcataatctaatttttatatttt-aatgtttaa 42754863  T
Q  151 ctatttggtctaataatcaatcatg------tgttcnnnnnnngttagtcctatattgtatacttgggatcacattctcatggtccaaatccttcatcat 244  Q
    ||||||||||||||||||||||||       | ||         ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42754862 ctatttggtctaataatcaatcattgttttttttttttttttgtttagtcctatattgtatacttaggatcacattctcatggtccaaatccttcatcat 42754763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 42720230 - 42720174
Alignment:
Q  190 tagtcctatattgtatacttgggatcacattctcatggtccaaatccttcatcattt 246  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  42720230 tagtcctatattgtatacttaggatcacattctcatggtccagatccttcatcattt 42720174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 42732745 - 42732802
Alignment:
Q  189 ttagtcctatattgtatacttgggatcacattctcatggtccaaatccttcatcattt 246  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  42732745 ttagtcctatattgtatacttaggatcacattcatatggtccaaatccttcatcattt 42732802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 42745632 - 42745603
Alignment:
Q  1 tttctcaaattttcattattcattgctcac 30  Q
    ||||||||||||||||||||||||||||||    
T  42745632 tttctcaaattttcattattcattgctcac 42745603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 42754993 - 42754964
Alignment:
Q  1 tttctcaaattttcattattcattgctcac 30  Q
    ||||||||||||||||||||||||||||||    
T  42754993 tttctcaaattttcattattcattgctcac 42754964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 37020374 - 37020334
Alignment:
Q  196 tatattgtatacttgggatcacattctcatggtccaaatcc 236  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  37020374 tatattgtatacttgggaggacattctcatggtccaaatcc 37020334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University