View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_low_15 (Length: 231)
Name: NF14817_low_15
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 34343490 - 34343691
Alignment:
| Q |
18 |
aaaacctgaatatttgagtctgtttaatcaagctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtgatgtgtttgaagggatt |
117 |
Q |
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| T |
34343490 |
aaaacctgaatatttgagtctgtttaatcaggctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggatt |
34343589 |
T |
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| Q |
118 |
gattctattgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgaccttccacagg |
217 |
Q |
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| T |
34343590 |
gattctattgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacagg |
34343689 |
T |
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| Q |
218 |
tt |
219 |
Q |
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| T |
34343690 |
tt |
34343691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 34330882 - 34331080
Alignment:
| Q |
17 |
aaaaacctgaatatttgagtctgtttaatcaagctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtgatgtgtttgaagggat |
116 |
Q |
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| T |
34330882 |
aaaaacctgcatatagtagtctcttcaatgaagccatggcaagtaattctcaaatggtaagcttggctttgaaaaattgtagtgaggtctttgaggggat |
34330981 |
T |
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| Q |
117 |
tgattctattgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgaccttccaca |
215 |
Q |
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| T |
34330982 |
agaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttgacgttccaca |
34331080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 4171970 - 4171800
Alignment:
| Q |
49 |
gctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtgatgtgtttgaagggattgattctattgtggatgttggtggtggaactg |
148 |
Q |
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| T |
4171970 |
gctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatg |
4171871 |
T |
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| Q |
149 |
gaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgaccttccacaggtt |
219 |
Q |
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| T |
4171870 |
gaacaactggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggtt |
4171800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 4177518 - 4177442
Alignment:
| Q |
124 |
attgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgt |
200 |
Q |
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| T |
4177518 |
attgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgt |
4177442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 4160036 - 4160202
Alignment:
| Q |
53 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtgatgtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
152 |
Q |
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| T |
4160036 |
tggctagtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
4160135 |
T |
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| Q |
153 |
cacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgaccttccacaggtt |
219 |
Q |
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| T |
4160136 |
aactggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggtt |
4160202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 34951459 - 34951317
Alignment:
| Q |
40 |
tttaatcaagctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtgatgtgtttgaagggattgattctattgtggatgttggtg |
139 |
Q |
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|||||| | ||||||| ||||||||||| | |||| |||||||||| | |||||| | ||| ||||||||||||| ||| | || |||||||||| |
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| T |
34951459 |
tttaatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtg |
34951360 |
T |
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| Q |
140 |
gtggaactggaaccacagctagaattatatgtgaggcttttcc |
182 |
Q |
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| T |
34951359 |
gtggaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 34946898 - 34946846
Alignment:
| Q |
130 |
gatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcc |
182 |
Q |
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| T |
34946898 |
gatgttggtggtggaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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