View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_low_3 (Length: 645)
Name: NF14817_low_3
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 17 - 645
Target Start/End: Complemental strand, 40191166 - 40190538
Alignment:
| Q |
17 |
aacatggagttaacatggtaaggaaacattttaaatagaatatatattagtttagatgcataaatttaaagaaaatatgaagaagaattatatcttaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40191166 |
aacatggagttaacatggtaaggaaacattttaaatagaatatatattagtttagatgcataaatttaaagaaaatatgaagaagaattatatcttaaaa |
40191067 |
T |
|
| Q |
117 |
tctatgcttttggagaagaaggtttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgagatatcacatcaactttcactaacaccgatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40191066 |
tctatgcttttggagaagaaggtttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgagatatcgcatcaactttcactaacaccgatt |
40190967 |
T |
|
| Q |
217 |
atatgtattcgagaaaaaggactaatatgggaccaatttgggtggagccaccaatttgaacctcaaaatttagttaaaggaccaagaaataagtatgccg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190966 |
atatgtattcgagaaaaaggactaatatgggaccaatttgggtggagccaccaatttgaacctcaaaatttagttaaaggaccaagaaataagtatgccg |
40190867 |
T |
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| Q |
317 |
aaatattactatatttttcttttatgccagttctataggttaggaatataatggtagaaataattatttgtgtgtttgcacttcctgtgtttttgcagtg |
416 |
Q |
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| T |
40190866 |
aaatattactatatttttcttttatgcaagttctataggttaggaatataatggtagaaataattatttgtgtgtttgcacttcctgtgtttttgcagtg |
40190767 |
T |
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| Q |
417 |
ttgttggatggtacagtgaagcaagaaagtggaatcaggtacgatttcttactttttgtgtcactgaaattaaatttctttggtaaagtaaatgccacca |
516 |
Q |
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| T |
40190766 |
ttgttggatggtacagtgaagcaagaaagtggaatcaggtacgatttcttactttttgtgtcactgaaattaaatttctttggtaaagtaaatgccacca |
40190667 |
T |
|
| Q |
517 |
agtaaagtgtagttccaacttccaaatgcttttcattttcacacgaaaatcttttgagctattatagtaagaaaaagttgaggtagttaaaatagaaatg |
616 |
Q |
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| T |
40190666 |
agtaaagtgtagttccaacttccaaatgcttttcattttcacacgaaaatcttttgaactattatagtaagaaaaagttgaggtagttaaaatagaaatg |
40190567 |
T |
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| Q |
617 |
gttagagttactagtacgttattatagtg |
645 |
Q |
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| T |
40190566 |
gttagagttactagtacgttattatagtg |
40190538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 14919767 - 14919659
Alignment:
| Q |
137 |
ggtttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgagatatcacatcaactttcactaacaccgattatatgtattcgagaaaaagg |
236 |
Q |
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|||||| || ||||||||||||||||| || || ||||||||||| |||| | || ||| ||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
14919767 |
ggttttcgttatgcatttcaactactaattaatcgtgaaggtcatatgaggtgtcgcataaactttcactaacgccgtttatatgtattttagaaaaagg |
14919668 |
T |
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| Q |
237 |
actaatatg |
245 |
Q |
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| T |
14919667 |
accaatatg |
14919659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 14919901 - 14919802
Alignment:
| Q |
17 |
aacatggagttaacatggtaaggaaacattttaaatagaatatatatt-agtttagatgcataaatttaaagaaaatatgaagaagaattatatcttaaa |
115 |
Q |
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||||||||||| ||||||||| |||||||||| ||| || || |||| | ||||||||||||||| | ||| ||||||||| || |||| ||| ||||| |
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| T |
14919901 |
aacatggagttgacatggtaaagaaacattttgaatcgaggatgtattaaatttagatgcataaatgtgaagcaaatatgaaaaataattgtattttaaa |
14919802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 38588544 - 38588492
Alignment:
| Q |
57 |
tatatattagtttagatgcataaatttaaagaaaatatgaagaagaattatat |
109 |
Q |
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| T |
38588544 |
tatatattagtttcgatgcataaatttgaagcgaatatgaagaagaattatat |
38588492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 10974090 - 10974037
Alignment:
| Q |
134 |
gaaggtttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgaga |
187 |
Q |
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| T |
10974090 |
gaaggttttcgagatgcatttcaactactagtttagggtgaaagtcatatgaga |
10974037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 3829008 - 3829072
Alignment:
| Q |
29 |
acatggtaaggaaacattttaaatagaatatatattagtttagatgcataaatttaaagaaaata |
93 |
Q |
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| T |
3829008 |
acatggcaaggaagcattttaaatggaggatatattagtttagatgcataaatttgaagcaaata |
3829072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 867272 - 867358
Alignment:
| Q |
139 |
tttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgagatatcacatcaactttcactaacaccgattatatgtatt |
225 |
Q |
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| T |
867272 |
tttttgtgatgcatttcaaatgctagtttatagtaaagatcctatgagatatcacgttatctttcaccaacatcgtttatttgtatt |
867358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 50401616 - 50401694
Alignment:
| Q |
130 |
agaagaaggtttttgtgatgcatttcaactactagtttatagtgaaggtcatgtgagatatcacatcaactttcactaa |
208 |
Q |
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||||||||| |||||||||||||||||| || | |||||| ||||| |||||| |||| | |||||||||| ||||| |
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| T |
50401616 |
agaagaagggttttgtgatgcatttcaattataaatttataatgaagatcatgtaagatgccgcatcaacttttactaa |
50401694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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