View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_low_4 (Length: 582)
Name: NF14817_low_4
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 122 - 564
Target Start/End: Original strand, 40454614 - 40455041
Alignment:
| Q |
122 |
gtgtagcttttgatgagattttatagttttaattggtagaaactttatctttgaataaggattggcctaatttctcccaagagaaaatttacattgtata |
221 |
Q |
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| T |
40454614 |
gtgtagcttttgatgagattttatagttttaattggtagaaactttatctttgaataaggattggcctaatttctcccaagagaaaatttacattgtata |
40454713 |
T |
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| Q |
222 |
aatgatgtgacaaaattaaaggcagctatttttattcaagagcaatgtcatttctcaccattttaaagttaaaatcccaatctagaagtgtttggaaaat |
321 |
Q |
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| T |
40454714 |
aatgatgtgacaaaattaaaggcagctatttttattcgaaagcaatgtcatttctcaccattttaaagtttaaatcccaatctagaagtgtttggaaaat |
40454813 |
T |
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| Q |
322 |
ctcaattattatctctctttctatactataataataataatatggtgttgattatatcgtgcgggcatagttgttgatagtacacggtttttagtataaa |
421 |
Q |
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| T |
40454814 |
ctcaattattatctctctttctatact---ataataataatatggtgttgattatatcgtgcgggcatagttgttga--------------tagtataaa |
40454896 |
T |
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| Q |
422 |
aaataactatagaatatgatacaaataaaatatcacccgtttgttcagaagtgattattggtttaactttttggaggc--atatatgccttggtgcttgc |
519 |
Q |
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| T |
40454897 |
aaataactatagaatatgatacaaataaaatatcacccgtttgttcagaagtgattattggtttaactttttggaggcatatatatgccttggtgcttgc |
40454996 |
T |
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| Q |
520 |
tttataaccgtccatcttcttttcaccaaaagtttagctcgctgt |
564 |
Q |
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| T |
40454997 |
tttataaccgtccatcttcttttcaccaaaagtttagctcgctgt |
40455041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 40454485 - 40454584
Alignment:
| Q |
14 |
caaaggtgaagactgcacaaatttggccagaatctgctgctgctgaagcaaagaaaacaaatacgatctaatagacagactgttgatgattttgtatgct |
113 |
Q |
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| T |
40454485 |
caaaggtgaagactgcacaaatttggccagaatctgctactgctgaagcaaagaaaacaaatacgatataat----agactgttgatgattttgtatgct |
40454580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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