View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_low_5 (Length: 558)
Name: NF14817_low_5
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Original strand, 40894607 - 40895141
Alignment:
| Q |
11 |
atcatcaatggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatt |
110 |
Q |
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| T |
40894607 |
atcatcaatggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatt |
40894706 |
T |
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| Q |
111 |
tgaatgtgtcgtgtgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtgg |
210 |
Q |
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| T |
40894707 |
tgaatgtgtcgtgtgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtgg |
40894806 |
T |
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| Q |
211 |
aaatcaacagatgcaaatgatgattctgaagatgattagtttgatgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgt |
310 |
Q |
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| T |
40894807 |
aaatcaacagatgcaaatgatgattctgaagatgattagtttgatgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgt |
40894906 |
T |
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| Q |
311 |
cacttgatgtataatagtaatagtagatgttcgtttcccacttgtgtgatggcaattatcatatagtaggctagtattaggagtctgaccttaattcac- |
409 |
Q |
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| T |
40894907 |
cacttgatgtataatagtaatagtagatgttcgtttcccacttgtatgatggcaattatcatatagtaggctagtattaggagtctgaccttaattcact |
40895006 |
T |
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| Q |
410 |
---tttgcttgttatttgtatcttggattcgtaacaagtttggattgttttgcccaataaatgctttttgttcttctttccctcgcttattatgggtatc |
506 |
Q |
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| T |
40895007 |
ttgtttgcttgttatttgtatcttggattcgaaacaagtttggattgttttgcccaataaatgctttttgttcttctttccctcgcttattatgggtatc |
40895106 |
T |
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| Q |
507 |
ttgttctttcctatgattagtaagagtggcattgt |
541 |
Q |
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| T |
40895107 |
ttgttctttcctatgattagtaagagtggcattgt |
40895141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 40898398 - 40898035
Alignment:
| Q |
20 |
ggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgt |
119 |
Q |
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| T |
40898398 |
ggtattattgttctttctgatttcatttgtttcggatttaagattgtttcattttgattagttcaattcaattgtgtgcttgtttagaattttaatgt-- |
40898301 |
T |
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| Q |
120 |
cgtgtgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagc---tctgatgagcagaagtggaaatca |
216 |
Q |
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| T |
40898300 |
--------tattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctcttctgatgtgcagaagtggaaatca |
40898209 |
T |
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| Q |
217 |
acagatgcaaatgatgattc------tgaagatgatta---gtttg-atgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaa |
306 |
Q |
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| T |
40898208 |
gcagatgcaaatgatgattctgtttttggtgctgattatgccttagtttgatgattctgaaggcaaaaccaaaatctcttgcgacaatgacaagcgaaaa |
40898109 |
T |
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| Q |
307 |
atgtcacttgatgtataatagtaatagtagatgttcgtttcccacttgtgtgatggcaattatcatatagtaggctagta |
386 |
Q |
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| T |
40898108 |
atgtc------tgtataatagtaatagtagatgttcatttcccactcgtgtgatggcaatcatcctatagtaggctagta |
40898035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 44153679 - 44153441
Alignment:
| Q |
20 |
ggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgt |
119 |
Q |
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| T |
44153679 |
ggtatttttgttttttctgatttcatttgtttcagatttaagattgtttcattatgattagttaaattcaattgagtgcttgtttagaatttgaatgtgc |
44153580 |
T |
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| Q |
120 |
cgtgtgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaaca |
219 |
Q |
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| T |
44153579 |
cgcatgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagca |
44153480 |
T |
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| Q |
220 |
gatgcaaatgatgattctgaagatgattagtttgatgat |
258 |
Q |
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| T |
44153479 |
gatgcgaatgatgattctgaagacgattagtttgatgat |
44153441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 44154027 - 44153937
Alignment:
| Q |
14 |
atcaatggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttga |
113 |
Q |
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| T |
44154027 |
atcaaaggtattattgttctttctgattttatttg-----------acaatgtttcatcatgattagttcaattcaactgtgtgcatgtctttaatttga |
44153939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 40898752 - 40898662
Alignment:
| Q |
14 |
atcaatggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttga |
113 |
Q |
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| T |
40898752 |
atcaaaggtattattgttctttctgattttatttg-----------acaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttga |
40898664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 44153435 - 44153385
Alignment:
| Q |
335 |
agatgttcgtttcccacttgtgtgatggcaattatcatatagtaggctagt |
385 |
Q |
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| T |
44153435 |
agatgttcatttcccactcgtgtgatggcaatcatcctatagtaggctagt |
44153385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 40897975 - 40897927
Alignment:
| Q |
424 |
gtatcttggattcgtaacaagtttggattgttttgcccaataaatgctt |
472 |
Q |
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| T |
40897975 |
gtatcttggatttgtaacaagtttggattattatgcccaaataatgctt |
40897927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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