View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14817_low_9 (Length: 314)
Name: NF14817_low_9
Description: NF14817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14817_low_9 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 46374 - 46168
Alignment:
| Q |
15 |
aatatacaaggacagtaggggaagaaaagtaataatcgatttacattgccgcagaagctactatcctttgcttctgctggaattgatttagatggccaga |
114 |
Q |
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| T |
46374 |
aatatacaaggacagtaggggaagaaaagtaataatcgatttacattgccgcagaagctactattctttgcttctgctggaattgattttgatggccaca |
46275 |
T |
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| Q |
115 |
attgattttttaaaaagacactcaaacacatatttagcaaaacaaactcaggtttagtcttgcaaacgaacgtttgccacatttcaacgtgcaaacaaac |
214 |
Q |
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| T |
46274 |
gttgattttccaaaaagacacccaaacacatatttagcaaaacaggctcacatttagtcttgcaaacgtacgtttgctacatttcaacgtgcaaccaaac |
46175 |
T |
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| Q |
215 |
aatagct |
221 |
Q |
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||||||| |
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| T |
46174 |
aatagct |
46168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 40903644 - 40903850
Alignment:
| Q |
15 |
aatatacaaggacagtaggggaagaaaagtaataatcgatttacattgccgcagaagctactatcctttgcttctgctggaattgatttagatggccaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
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| T |
40903644 |
aatatacaaggacagtaggggaagaaaagtaataatcgatttacattgccgcagaagctactattctttgcttctgctggaattgattttgatggccaca |
40903743 |
T |
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| Q |
115 |
attgattttttaaaaagacactcaaacacatatttagcaaaacaaactcaggtttagtcttgcaaacgaacgtttgccacatttcaacgtgcaaacaaac |
214 |
Q |
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| T |
40903744 |
gttgattttccaaaaagacacccaaacacatatttagcaaaacaggctcacatttagtcttgcaaacgtacgtttgctacatttcaacgtgcaaccaaac |
40903843 |
T |
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| Q |
215 |
aatagct |
221 |
Q |
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||||||| |
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| T |
40903844 |
aatagct |
40903850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 45424300 - 45424382
Alignment:
| Q |
140 |
acacatatttagcaaaacaaactcaggtttagtcttgcaaacgaacgtttgccacatttcaacgtgcaaacaaacaatagctt |
222 |
Q |
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| T |
45424300 |
acacatatttagcaaaacagactcacgtttagtcttgcaaacgtacgtttgccacatttcaacgtgcaaccaaacaatagctt |
45424382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 45424248 - 45424300
Alignment:
| Q |
15 |
aatatacaaggacagtaggggaagaaaagtaataatcgatttacattgccgca |
67 |
Q |
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| T |
45424248 |
aatatacaaggacagtaggggaagaaaagtaataatcgatttacattgccgca |
45424300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 31777214 - 31777290
Alignment:
| Q |
220 |
cttcgttcaagaccccatttcaaatttttatgttaattcatcaatttttaagggataccgtttcttaggttatttac |
296 |
Q |
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| T |
31777214 |
cttcgttcaagatcccatttcaaatctttatgttaattcatcaatttttaaggtataccgtttcttaggttatttac |
31777290 |
T |
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