View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14818_high_5 (Length: 239)

Name: NF14818_high_5
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14818_high_5
NF14818_high_5
[»] chr5 (13 HSPs)
chr5 (1-239)||(8528668-8528922)
chr5 (5-145)||(8535333-8535473)
chr5 (5-145)||(9074854-9074994)
chr5 (28-145)||(1600437-1600554)
chr5 (54-145)||(8677637-8677728)
chr5 (53-145)||(8548273-8548365)
chr5 (153-239)||(8535207-8535294)
chr5 (54-145)||(8644044-8644135)
chr5 (54-143)||(8636701-8636790)
chr5 (54-109)||(8641242-8641297)
chr5 (153-222)||(8548409-8548478)
chr5 (54-142)||(9003305-9003393)
chr5 (157-226)||(1600601-1600670)
[»] chr4 (1 HSPs)
chr4 (1-239)||(9442829-9443083)
[»] scaffold0627 (1 HSPs)
scaffold0627 (50-145)||(4492-4587)
[»] chr1 (1 HSPs)
chr1 (16-145)||(5130638-5130767)
[»] chr7 (2 HSPs)
chr7 (5-120)||(35779694-35779809)
chr7 (52-145)||(48362030-48362128)
[»] chr6 (1 HSPs)
chr6 (52-145)||(16716179-16716272)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8528922 - 8528668
Alignment:
Q  1 tgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528922 tgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgtt 8528823  T
Q  101 ttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||    
T  8528822 ttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttccttacaagtcat 8528723  T
Q  185 agtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcct 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528722 agtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcct 8528668  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 8535473 - 8535333
Alignment:
Q  5 aaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttga 104  Q
    |||||||| ||| |||||||||||||| | |||||| |   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8535473 aaatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttga 8535374  T
Q  105 aaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    |||| | ||||||||||||||||||||||||||||||||||    
T  8535373 aaggtgacaatattgaggttctgaatatccactcaaggtaa 8535333  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 9074854 - 9074994
Alignment:
Q  5 aaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttga 104  Q
    |||||||| ||||||||||||||||||||||||||||    ||| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  9074854 aaatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttga 9074953  T
Q  105 aaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    |||||| |||||| ||||| |||||||||||||||||||||    
T  9074954 aaggagacaatatcgaggtgctgaatatccactcaaggtaa 9074994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 1600437 - 1600554
Alignment:
Q  28 aattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctg 127  Q
    |||||||||||||||   | ||| ||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||    
T  1600437 aattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctg 1600536  T
Q  128 aatatccactcaaggtaa 145  Q
    ||||||||||||||||||    
T  1600537 aatatccactcaaggtaa 1600554  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 8677728 - 8677637
Alignment:
Q  54 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  8677728 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 8548273 - 8548365
Alignment:
Q  53 tttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  8548273 tttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 8535294 - 8535207
Alignment:
Q  153 aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcct 239  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| ||||||||||||    
T  8535294 aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcct 8535207  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 8644135 - 8644044
Alignment:
Q  54 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| ||||| |||| | |||||||||||||||||||||    
T  8644135 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 8636790 - 8636701
Alignment:
Q  54 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt 143  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||  ||||||||| |||||| ||||| |||||||||||||||||||    
T  8636790 ttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 8641297 - 8641242
Alignment:
Q  54 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaagga 109  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||  ||||||||    
T  8641297 ttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 8548409 - 8548478
Alignment:
Q  153 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaaggg 222  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  ||||||||||||||    
T  8548409 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaaggg 8548478  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 9003393 - 9003305
Alignment:
Q  54 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaagg 142  Q
    |||||||||| ||||| |||||||||||||| ||||||||||| | | | || |||| |||| |||||||  ||||| || ||||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaagg 9003305  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
Q  157 tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt 226  Q
    ||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| |||||||||||||    
T  1600601 tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt 1600670  T

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Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9443083 - 9442829
Alignment:
Q  1 tgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9443083 tgaaaaatatgggttcaaagtttttcgaattcatgggagtcggaaaaattattttgaagtaatccaacacattccaagtctaatttcattgaaggatgtt 9442984  T
Q  101 ttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||| |||||||||||    
T  9442983 ttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttctttacaagtcat 9442884  T
Q  185 agtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcct 239  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  9442883 agtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtttcct 9442829  T

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Target: scaffold0627 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 4587 - 4492
Alignment:
Q  50 tattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||   ||||||||| ||||||||||||  ||||||||||||||||||||    
T  4587 tattttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 5130767 - 5130638
Alignment:
Q  16 caaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaat 115  Q
    ||||||||||||||||||||||| | |   |||  |  |||||||||| ||||| ||| |||||||||||||| | |||||| || ||||||||| ||||    
T  5130767 caaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaat 5130668  T
Q  116 attgaggttctgaatatccactcaaggtaa 145  Q
    |||||||| |||||||| ||||||||||||    
T  5130667 attgaggtgctgaatattcactcaaggtaa 5130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 35779809 - 35779694
Alignment:
Q  5 aaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttga 104  Q
    |||||||| | ||||||||||||||||| ||||| |||   ||| | | |||||||||| ||||| |||||||||||||| ||||||||||||||| | |    
T  35779809 aaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaa 35779710  T
Q  105 aaggagtcaatattga 120  Q
    |||||| |||||||||    
T  35779709 aaggagacaatattga 35779694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 48362030 - 48362128
Alignment:
Q  52 ttttgaagtaatcccacacattccaagtctaat-----ttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    |||||||||||||||||| ||||||||||||||     ||||||||||||||| ||||||||||  ||||| |||||  ||||| ||||||||||||||    
T  48362030 ttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaa 48362128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 16716272 - 16716179
Alignment:
Q  52 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 145  Q
    |||| ||||||| ||||| |||||||||||||| |||||||||||||   |||||||||  |||||||||||  ||||||||||||||||||||    
T  16716272 ttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa 16716179  T

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