View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14818_high_8 (Length: 225)
Name: NF14818_high_8
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 8528691 - 8528504
Alignment:
| Q |
15 |
caaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttactta |
114 |
Q |
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| T |
8528691 |
caaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttactta |
8528592 |
T |
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| Q |
115 |
ggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgt |
202 |
Q |
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| T |
8528591 |
ggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgt |
8528504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 8535122 - 8535074
Alignment:
| Q |
151 |
gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga |
199 |
Q |
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| T |
8535122 |
gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatga |
8535074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 9442852 - 9442654
Alignment:
| Q |
15 |
caaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttactta |
114 |
Q |
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| T |
9442852 |
caaagggacttgtgtaagtttcctatgttacacttatattttaaacttactattttgccattccatttggagaaaagaaaacatgttgttaggttacttc |
9442753 |
T |
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| Q |
115 |
ggtagatatattctcacaacgacatgttg-----------gagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgt |
202 |
Q |
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| T |
9442752 |
ggttgatatattctcacaacgacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcagctaatatatttatgatgt |
9442654 |
T |
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