View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14818_low_1 (Length: 634)
Name: NF14818_low_1
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 48 - 595
Target Start/End: Complemental strand, 13117100 - 13116550
Alignment:
| Q |
48 |
tttgctcagcaaaattagttctcacattagagacaaaaaatataatacaatcatcatacaagagtcatattgctcaagttctttcaatagtatataacac |
147 |
Q |
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| T |
13117100 |
tttgctcagcaacattagttctcacattagagacaaaaaatataatacaattatcatacaagagtcatattgctcaagttcttacaatagtatataagac |
13117001 |
T |
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| Q |
148 |
gtattatatagtgcaatatgtgataataagaagaatcacttatacaacaaattaatcaaaattcattgtagaggaatcaaagccaccaaagatgatgctt |
247 |
Q |
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| T |
13117000 |
gtattatatagtgcaatatgtgataataggaagaaccacttatacaacaaattaatcaaaattcattgtagaggaatcaaagccaccaaagatgatgctt |
13116901 |
T |
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| Q |
248 |
ccgttgccatttccatgaacataaccggtgttgttaataagaccctccatgttttgggtgcccccgttggagaaagtgtcgggaggtggcttttggcgac |
347 |
Q |
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| T |
13116900 |
ccgttgccatttccatgaacataaccggtgttgttaataagaccctccatgttttgggtgcccccgttggagaaagtgtcgggaggtggcttttggcgac |
13116801 |
T |
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| Q |
348 |
gagcaacggcattggaaccattgcggttgcgtcgtcgtggttgtcgaggttgtggttcttccacatgatcctcatcaaggatgcgcagcaattgcatcaa |
447 |
Q |
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| T |
13116800 |
gagcaacggcactggaaccattgcggttgcgtcgtcgtggttgtcgaggttgtggttcttccacatgatcctcatcaaggaggttcagcaattgcatcaa |
13116701 |
T |
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| Q |
448 |
tgatgccattgttagcaagctagcttggaagagctaaagttttagatgcctt-gtaggagatgttgcacccatctatatataga--atatgtatatgact |
544 |
Q |
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| T |
13116700 |
tgatgccattgttaactagttagcttggaagggctcaagttttagatgccttggtaggagatgttgcacccatctatatatagaatatatgtatatgact |
13116601 |
T |
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| Q |
545 |
tgcttaaggaataatatgtaggaccctgttaacttgaagagtaagctaagt |
595 |
Q |
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| T |
13116600 |
tgcttaaggaataatatgtaggaccctgttaacttgaagagtaagctaagt |
13116550 |
T |
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