View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14818_low_2 (Length: 454)
Name: NF14818_low_2
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 38751160 - 38751598
Alignment:
| Q |
1 |
aacaaaaaacaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751160 |
aacaaaaaacaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggat |
38751259 |
T |
|
| Q |
101 |
gaaccctcttttttccacaaagaggaacaccaaagagcttcacagaagagctgttacaatctttatcatttggtaattgaggtgatgatgaatccaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751260 |
gaaccctcttttttccacaaagaggaacaccaaagagcttcacagaagagctattacaatctttatcatttggtaattgaggtgatgatgaatccaattc |
38751359 |
T |
|
| Q |
201 |
aacaagcttcaaaatagtagcactattgttgcttctttgttcaaatggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751360 |
aacaagcttcaaaatagtagcactattgttgcttctttgttcaaagggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaaga |
38751459 |
T |
|
| Q |
301 |
ttcttcatgtgactgagttctgataacagcatgaaattctttctccttaatctttgattatcctcagaaagtgctgttaagatatcggtgtttgatttag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751460 |
ttcttcatgtgactgagttctgataacagcatgaaattctttctccttaatctttgattatcctcagaaagtgctgttaagatatcggtgtttgatttag |
38751559 |
T |
|
| Q |
401 |
gagatggtaatggagaatcaatccagcatatattttcat |
439 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
38751560 |
gagatggtaatggagaatcaatccagcatatactttcat |
38751598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 3021289 - 3020846
Alignment:
| Q |
1 |
aacaaaaaacaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021289 |
aacaaaaaacaatcaaagaaatccattacagactttaacattatcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggat |
3021190 |
T |
|
| Q |
101 |
gaaccctcttttttccacaaagaggaacaccaaagagcttcacagaagagctgttacaatctttatcatttggtaattgaggtgatgatgaatccaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021189 |
gaaccctcttttttccacaaagaggaacaccaaaaagcttaacagaagagctattacaatctttatcatttggtaattgaggtgatgatgaatccaattc |
3021090 |
T |
|
| Q |
201 |
aacaagcttcaaaatagtagcactattgttgcttctttgttcaaatggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaaga |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021089 |
aacaagcttcaaaatagaagcactattgttgcttctttattcaaagggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaaga |
3020990 |
T |
|
| Q |
301 |
ttcttcatgtgactgagttctgataacagcatgaaattctttctccttaatctttgattatcctcagaaagtgctgttaagatatcg-----gtgtttga |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
3020989 |
ttcttcatgtgactgagttctgataacagcatgaaattctttctccttagtctttgattatcctcagagagtgctgttaagatatcatatcagtgtttga |
3020890 |
T |
|
| Q |
396 |
tttaggagatggtaatggagaatcaatccagcatatattttcat |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| |||||| |
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|
| T |
3020889 |
tttaggagatggtaatggagaatcaatccaacagatactttcat |
3020846 |
T |
|
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