View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14818_low_3 (Length: 435)
Name: NF14818_low_3
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 11706139 - 11706542
Alignment:
| Q |
16 |
cacagacactagacacgacatttataataattaaagaaagtaaactaattgaacgtaattgcacatgttgtgccagacacaggacatgccttcaatcaga |
115 |
Q |
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| T |
11706139 |
cacagacactagacacgacatttgtaataatttaagaaagtaaactaattgaacaaaatcgcaagtgttgtgctggacacaggacacgccttcaatcaga |
11706238 |
T |
|
| Q |
116 |
attgttggtgctactgtcagtcaaaatgaaccgctaaggtcaacataaaacgaaatttagcaaaatacacaaaatattaaaattatgtgttcatgtgtgc |
215 |
Q |
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| T |
11706239 |
attgtcggtgctactgtcggtcaaaatgaaccgctaaggtcaacataaaacgaaatttagcaaaatacacaaaatattaaaattatgtgttcatgtgtgc |
11706338 |
T |
|
| Q |
216 |
atatttgaaggaaagcaataggagatctaaattactattgggtaggttcttgtcataaataaataaggtataccataattcatgcatctaaagtgaagag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11706339 |
atatttgaaggaaagcaataggagatctaaattactattgggtaggttcttgtcataaataaataaggtataccataattcatgcatctaaagtgaaaag |
11706438 |
T |
|
| Q |
316 |
ggtaagaggaaatacacattttatcatagaaaggaagtaattcttaaagatcaaacaaaaaatagtaagattataaaagtttcaacctaccactccctca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11706439 |
ggtaagaggaaatacacattttatcatagaaaggaagtaattcttaaagatcaaacaaaaaatagtaagattataaaagttttaacctaccactccctca |
11706538 |
T |
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| Q |
416 |
aaat |
419 |
Q |
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|||| |
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| T |
11706539 |
aaat |
11706542 |
T |
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