View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14818_low_4 (Length: 429)
Name: NF14818_low_4
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 145 - 416
Target Start/End: Complemental strand, 35088722 - 35088449
Alignment:
| Q |
145 |
tgagtaataatgtttgtataaccattttttgacaatttatgagacaatcttattatttttctctgataaagagagaga--aagaacacaatgtgactatg |
242 |
Q |
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| T |
35088722 |
tgagtaataatgtttgtataatcattttttaataacttatgagacaatcttattatttttctctgataaagagagagagaaagaacacaatgtgactatg |
35088623 |
T |
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| Q |
243 |
aatgaaagttgtctaaaaactatcacaaaatgattgtataataacatatctnnnnnnntacataagaaaatgttcacctataaaagtaatcatattcaag |
342 |
Q |
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| T |
35088622 |
aatgaaaattgtctaaaaactatcacaaaatgattgtataataccaaatctaaaaaaatacataagaaaatgttcatctataaaagtaatcatattcaag |
35088523 |
T |
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| Q |
343 |
acattttagataaatataaatatctctttcagttaagatttgaacattatttcgtcacgaaatttagccatttt |
416 |
Q |
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| T |
35088522 |
acattttagacaaatataaatatctctttcagttaagatttgaacattatttcgtcaccaaatttagccatttt |
35088449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 35088853 - 35088792
Alignment:
| Q |
16 |
atgaaggtaatgtcgtgcaagtatcaaattaaccttaatctggtgggttgtgttatttagtt |
77 |
Q |
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| T |
35088853 |
atgaaggtaatgtcgtgcaagtatcaaattaaccttaatctggtgggttgtgttatttagtt |
35088792 |
T |
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