View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14818_low_6 (Length: 328)
Name: NF14818_low_6
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 2820921 - 2821222
Alignment:
| Q |
17 |
gtttgattttctctcttacaaaattatgactcttgtttgannnnnnnncataccaaaatgccaaaggtatgcataaaactagaaatgatttagaataatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2820921 |
gtttgattttctctcttacaaaattacgaatcttgtttgattttctttcataccaaaatgccaaaggtatgcataaaactagaaatgatttagaataatt |
2821020 |
T |
|
| Q |
117 |
tgatatacatgaatctagtttagatatatataattgtatggatgatttagctgacgaattttggttctgttgttaagaatgagacttatagcccacacgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2821021 |
tgatatacatgaatctagtttagatatatataattgtatggatgatttagctgacgaattttggttctgttgttaagaatgagacttataccccacacgg |
2821120 |
T |
|
| Q |
217 |
gggcataatattttgccaaaaacgattggtcttattggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821121 |
gggcataatattttgccaaaaacgattggtcttattggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactac |
2821220 |
T |
|
| Q |
317 |
ct |
318 |
Q |
| |
|
|| |
|
|
| T |
2821221 |
ct |
2821222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 32158421 - 32158272
Alignment:
| Q |
100 |
aatgatttagaataatttgatatacatgaatctagtttagatatatataattgtatggatgatttagctgacgaattttggttctgttgttaagaatgag |
199 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||| ||||||||||| | |
|
|
| T |
32158421 |
aatgatttagaagaatttgatatacatgaatctagtttagatagatttaattgtattaatgatttaggtgacgaattttggttc---tgttaagaatgtg |
32158325 |
T |
|
| Q |
200 |
acttatagcccacacgggggcataatattttgccaaaaacgattggtcttattgg |
254 |
Q |
| |
|
||||||| || ||| ||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
32158324 |
acttata--ccccaccgggacataatattttaccaaaaacgattgttcttattgg |
32158272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 32212035 - 32212101
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32212035 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
32212101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32110500 - 32110434
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32110500 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttgttaactacct |
32110434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32118764 - 32118698
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32118764 |
tggacaagcacattcacttgtcatattgcaacttttctgcttttaagaaattggttattaactacct |
32118698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32152611 - 32152545
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32152611 |
tggacaagcaaattcatttgtcatattgcaacttttctgcttttaagcaattggttgttaactacct |
32152545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32157794 - 32157728
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
32157794 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagaaattggttactaactacct |
32157728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32182546 - 32182480
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
32182546 |
tggacaagcaaattcacttgtcatattgcaacttttctggttttaagcaattggttgttaactacct |
32182480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 32206960 - 32207026
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
32206960 |
tggacaagcaaattcacttgtcatattgcaacttttctgctttgaagcaattggttgttaactacct |
32207026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32174460 - 32174394
Alignment:
| Q |
252 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
32174460 |
tggacaaacaaattcacttgtcatattgcaacttttctgcttttaagcaattggttgtcaactacct |
32174394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 32156682 - 32156618
Alignment:
| Q |
254 |
gacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct |
318 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
32156682 |
gacaagcagattcacttgtcatattgcaacttttctgcttttaagaaattgattattaactacct |
32156618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 32111039 - 32110948
Alignment:
| Q |
100 |
aatgatttagaataatttgatatacatgaatctagtttagatatatataattgtatggatgatttagctgacgaattttggttctgttgttaa |
192 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||| |||||||||| |||| | || |||||||||| ||||||| ||||| || ||||||| |
|
|
| T |
32111039 |
aatgatttggaagaatttgacatacatgaatctag-ttagatatatttaatcatttgcatgatttagccgacgaatgttggtcctattgttaa |
32110948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University