View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14818_low_9 (Length: 244)
Name: NF14818_low_9
Description: NF14818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14818_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 36615789 - 36615996
Alignment:
| Q |
16 |
ttgcagggatcaaaacccaaccaaaccatatatgcaaggatcatttgcatattttagccaaaagttaataacttgatgtgtcaatgatatttaccttaga |
115 |
Q |
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| T |
36615789 |
ttgcagggatcaaaacccaaccaaaccatatatgcaaggatcatttgcatattttagccaaaatttaataacttgatgtgtcaatgatatttaccttaga |
36615888 |
T |
|
| Q |
116 |
aatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgcattgagattcaatca |
215 |
Q |
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| T |
36615889 |
aatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgcattgacattcaatca |
36615988 |
T |
|
| Q |
216 |
attttgtg |
223 |
Q |
| |
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|||||||| |
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| T |
36615989 |
attttgtg |
36615996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 36609948 - 36609997
Alignment:
| Q |
169 |
acaagacaatagactcattcatttttatttgcattgagattcaatcaatt |
218 |
Q |
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| T |
36609948 |
acaagacaataggctcattcatttttatttgcatttagattcaatcaatt |
36609997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 36623098 - 36623147
Alignment:
| Q |
167 |
atacaagacaatagactcattcatttttatttgcattgagattcaatcaa |
216 |
Q |
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|
| T |
36623098 |
atacatgacaatagactcgttcatttttatctgcattgagattcaatcaa |
36623147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 28958522 - 28958476
Alignment:
| Q |
26 |
caaaacccaaccaaaccatatatgcaaggatcatttgcatattttag |
72 |
Q |
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||||| ||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
28958522 |
caaaatccaaccaaaccatatttgcatggaccatttgcatattttag |
28958476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 19670855 - 19670970
Alignment:
| Q |
105 |
tttaccttagaaatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgcattg |
204 |
Q |
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|||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
19670855 |
tttaccttggaattttaagtatgaatgatatagttttgttaaaaatatattcaatgaaaataatacaagacaatatattcattcatttttatttgcattg |
19670954 |
T |
|
| Q |
205 |
agattcaatcaatttt |
220 |
Q |
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| T |
19670955 |
tgattcaatcaatttt |
19670970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 45550550 - 45550428
Alignment:
| Q |
97 |
caatgatatttaccttagaaatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttat |
196 |
Q |
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||||||||| ||||||||||| ||| |||||| ||| |||||||||||||||| ||||| |||||| |||||||||||||||| | ||||||||||| |
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| T |
45550550 |
caatgatatataccttagaaacttaggtatgatcggttaagttttgttaaaaatagattcaatgaaaacaatacaagacaatagagacgttcatttttat |
45550451 |
T |
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| Q |
197 |
ttgcattgagattcaatcaattt |
219 |
Q |
| |
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|| |||||||||||||| ||||| |
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| T |
45550450 |
ttacattgagattcaataaattt |
45550428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 45544409 - 45544342
Alignment:
| Q |
153 |
attcagtgaaaataatacaagacaatagactcattcatttttatttgcattgagattcaatcaatttt |
220 |
Q |
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| T |
45544409 |
attcaatgaaaataatataagtcaatagactcattcttttttatttacattgatattcaatcaatttt |
45544342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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