View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_high_1 (Length: 677)
Name: NF14819_high_1
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 619; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 4 - 668
Target Start/End: Complemental strand, 17408515 - 17407854
Alignment:
| Q |
4 |
ttcttaagctctaaaggtcctatacatggcctttttagaccatacttttcgacatttcccaaaatcacacgagttagaccaagcaatatcttatcgacca |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408515 |
ttcttaagctctaaaggtcccatacatggcctttttagaccatacttttcgacatttcccaaaatcacacgagttagaccaagcaatatcttatcgacca |
17408416 |
T |
|
| Q |
104 |
tccaaattggtaaccttttcatcaacataacagctacctcataagttgattttccgaatatttccctcggtaagacatgaacctattaatcaaaaatcac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17408415 |
tccaaattggtaaccttttcatcaacataacagctacctcataagttgattttccgaatatttccctcggtaacacatgaacctattaatcaaaaatcac |
17408316 |
T |
|
| Q |
204 |
aaaaaataaagatggtcacaatctatacacgtaaaaatgcaaagtatgaatcaagattaacataattaatcaaagtaattaatttttgtttaagtactca |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17408315 |
aaaaaataaagatggtcacaatctatacacataaaaatgcaaacaatgaatcaagattaacat---taatcaaagtaattaatttttgtttaagtactca |
17408219 |
T |
|
| Q |
304 |
ccgagcttcgaacgaccattgatggatttgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttt |
403 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408218 |
ccgaacttcgaacaaccattgatggatttgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttt |
17408119 |
T |
|
| Q |
404 |
tccactataattcacaccagatttatagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408118 |
tccactataattcacaccagatttatagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttt |
17408019 |
T |
|
| Q |
504 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttcaacaactttatcactttttatcctattgctcttaatcctccaaagaccaaaggttt |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408018 |
tcaccggtagcaaccacaagccacctacaaatatactcaacttcaacaactttatcactttttatcctattgctcttaatcctccaaagaccaaaggttt |
17407919 |
T |
|
| Q |
604 |
catcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttttcgcatat |
668 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17407918 |
catcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttttcgcatat |
17407854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 332 - 447
Target Start/End: Original strand, 29857465 - 29857580
Alignment:
| Q |
332 |
tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag |
431 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| |||||||| ||||| |||||||| | ||| || || || ||| || | |||| |||||||| |
|
|
| T |
29857465 |
tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa |
29857564 |
T |
|
| Q |
432 |
tcacaagcatgcataa |
447 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
29857565 |
tcacaagcatgaataa |
29857580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
504 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
548 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 888402 - 888460
Alignment:
| Q |
333 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
391 |
Q |
| |
|
|||| ||| ||||||||||| | | |||||||||| || |||||||||||||||||||| |
|
|
| T |
888402 |
gcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaac |
888460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 39733423 - 39733482
Alignment:
| Q |
347 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
406 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39733423 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39733482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 548
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
501 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
548 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 548
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
501 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
548 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 39839535 - 39839476
Alignment:
| Q |
347 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
406 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39839535 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39839476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 50667920 - 50667862
Alignment:
| Q |
333 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
391 |
Q |
| |
|
|||| ||||||||||||||| | | |||||||||| |||||||| ||||| |||||||| |
|
|
| T |
50667920 |
gcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac |
50667862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University