View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_12 (Length: 519)
Name: NF14819_high_12
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 8453154 - 8452677
Alignment:
| Q |
17 |
attatccaaatgatcatggcatcaatatctttctttcatgcaggttcgttctacttctggtgtacatttgagcaaatcccttcattccaacttacaaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
8453154 |
attatccaaatgatcatggcatcaatatctttc----atgcaggttcgttctacttctggtgtacattcgagcaaatcctttcattccaacttacaaaaa |
8453059 |
T |
|
| Q |
117 |
gaaaccagtactgatattccaagcaacatgaggcatgattatgtgaaaattcacacatccttttcctctataaagtaatattatctgctcttcattcttc |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8453058 |
gaaaccattactgatattccaagcaacatgaggcatgattatgtgaaaattgacacatccttttcctctataaagtaatattatctgctcttcattcttc |
8452959 |
T |
|
| Q |
217 |
ttgtaatgtcttaaatattatggatttatcagactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcct |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452958 |
ttgtaatgtcttaaatat---ggatttatcagactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcct |
8452862 |
T |
|
| Q |
317 |
ttgattaattatttaacttgaacttgatcttggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452861 |
ttgattaattatttaacttgaacttgatcttggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgat |
8452762 |
T |
|
| Q |
417 |
cattatgctgtatttcctattgttccttagtttaca-ttttnnnnnnntgataatttaattaatatccccctcttcatccttgcctatg |
504 |
Q |
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||||||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
8452761 |
cattatgttgtatttcctattgttccttagtttacatttttccccccctgataat----ttaatatccccctcttcatccttgcctatg |
8452677 |
T |
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