View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_high_14 (Length: 494)

Name: NF14819_high_14
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_high_14
NF14819_high_14
[»] chr4 (13 HSPs)
chr4 (1-479)||(8756970-8757455)
chr4 (343-479)||(32212750-32212888)
chr4 (360-455)||(45047205-45047300)
chr4 (360-478)||(6077972-6078089)
chr4 (346-464)||(25479640-25479760)
chr4 (360-464)||(1586389-1586497)
chr4 (343-421)||(26417136-26417216)
chr4 (344-421)||(54998071-54998150)
chr4 (380-421)||(37274902-37274943)
chr4 (377-454)||(46061495-46061572)
chr4 (376-464)||(22702363-22702451)
chr4 (376-464)||(22991666-22991754)
chr4 (403-455)||(41248328-41248380)
[»] chr3 (8 HSPs)
chr3 (345-463)||(377025-377146)
chr3 (343-464)||(53143466-53143589)
chr3 (363-455)||(45707583-45707675)
chr3 (360-464)||(7885899-7886004)
chr3 (343-422)||(48457845-48457927)
chr3 (343-421)||(17378670-17378751)
chr3 (360-422)||(24744521-24744584)
chr3 (362-421)||(50345891-50345951)
[»] chr5 (8 HSPs)
chr5 (346-479)||(33494788-33494923)
chr5 (360-467)||(5367645-5367753)
chr5 (361-464)||(36974209-36974311)
chr5 (361-464)||(4942491-4942595)
chr5 (402-478)||(39955173-39955249)
chr5 (360-478)||(15558527-15558646)
chr5 (374-464)||(30471695-30471785)
chr5 (394-464)||(38037342-38037412)
[»] chr2 (5 HSPs)
chr2 (360-464)||(39445797-39445901)
chr2 (378-464)||(45154268-45154354)
chr2 (382-455)||(37847903-37847976)
chr2 (347-422)||(18379775-18379852)
chr2 (343-439)||(11512019-11512119)
[»] chr7 (11 HSPs)
chr7 (362-464)||(42710562-42710664)
chr7 (361-476)||(34975599-34975713)
chr7 (343-464)||(17603891-17604013)
chr7 (361-464)||(25795898-25796000)
chr7 (360-479)||(9486875-9486995)
chr7 (360-464)||(33174130-33174234)
chr7 (343-422)||(958117-958198)
chr7 (361-419)||(36655617-36655675)
chr7 (360-421)||(37503833-37503895)
chr7 (368-417)||(46209118-46209166)
chr7 (362-422)||(33326527-33326587)
[»] chr1 (15 HSPs)
chr1 (364-456)||(31206421-31206513)
chr1 (367-478)||(33603507-33603619)
chr1 (365-478)||(5041021-5041135)
chr1 (345-455)||(32913784-32913897)
chr1 (393-477)||(7789688-7789772)
chr1 (376-475)||(5114077-5114175)
chr1 (345-464)||(7712293-7712415)
chr1 (343-478)||(33259497-33259634)
chr1 (343-478)||(33279656-33279793)
chr1 (376-454)||(42483792-42483868)
chr1 (400-479)||(8444908-8444987)
chr1 (361-422)||(37583160-37583221)
chr1 (360-438)||(51244187-51244267)
chr1 (360-421)||(35615614-35615676)
chr1 (361-417)||(3582265-3582321)
[»] chr6 (5 HSPs)
chr6 (360-467)||(24141322-24141430)
chr6 (360-464)||(31632396-31632501)
chr6 (377-479)||(11703231-11703333)
chr6 (362-455)||(33099586-33099680)
chr6 (368-479)||(30250260-30250380)
[»] scaffold0092 (1 HSPs)
scaffold0092 (345-464)||(4892-5015)
[»] scaffold0067 (1 HSPs)
scaffold0067 (378-464)||(224-310)
[»] chr8 (1 HSPs)
chr8 (402-464)||(1421923-1421985)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 8756970 - 8757455
Alignment:
Q  1 taccagttatgattttaatttcaatatacttctggataccagaccttttaagaataaaagtacccataagattgaaagaccttttgaactattcgagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8756970 taccagttatgattttaatttcaatatacttctggataccagaccttttgagaataaaagtacccataagattgaaagaccttttgaactattcgagttt 8757069  T
Q  101 tagatgtttggaatgcctttattgttagactacgaccattctctgtgtgcgcttttgttcaataataaccatgaaaataacgatagcgatattgatataa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  8757070 tagatgtttggaatacctttattgttagactacgaccattctctgtgtgcgcttttgttcaataataaccatgaaaataacgatagcgatattgata--- 8757166  T
Q  201 ctattcctagaaatgagttttcaaagaaactttgacaagaatgtgaacaatataacaatgaatataaccatccccaatggcgaggtcttcgccatttaag 300  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||| | ||||   ||||| |||||||||||||||||||    
T  8757167 -tattcctagaaatgagttttcaaagaaactttgacaagactgtgaacagtataataaagaatatgatcatctttaatggtgaggtcttcgccatttaag 8757265  T
Q  301 attcaatatttaatatgtacttttattgaggaannnnnnnnnggggtctcataagaccc--ggtctcacttaagacctcattcttaagtgaatctcacat 398  Q
    ||||  ||| ||||||||||| |||||| ||||         ||| |||| ||||| ||   ||||||||||||||||||||||||| |||||||||||     
T  8757266 attcggtatctaatatgtactcttattggggaatattttttggggatctcttaagatccagagtctcacttaagacctcattcttaactgaatctcacac 8757365  T
Q  399 cactttttaataaaataatcattggttaattgt---------ttttgttgaaatgtaaatgataaaatgttattgatgtgactcatttag 479  Q
    |||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||| |||||||||||||  |||||||    
T  8757366 cactttttaataaaataatcattggttagttgtttttgttgattttgttgaaatgtaaatgataaaaagttattgatgtgatccatttag 8757455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 343 - 479
Target Start/End: Complemental strand, 32212888 - 32212750
Alignment:
Q  343 ggggtctcataagaccc--ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttga 440  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||||  | ||||| |||||||||    
T  32212888 ggggtctcttaagacccagggtctcacttaagacctcattcttaagtagacctcacaccactttttaataaaataatcatttttcaattgcttttgttga 32212789  T
Q  441 aatgtaaatgataaaatgttattgatgtgactcatttag 479  Q
    |||||||||||||||  ||||||| || ||| |||||||    
T  32212788 aatgtaaatgataaagagttattggtgggacccatttag 32212750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 360 - 455
Target Start/End: Complemental strand, 45047300 - 45047205
Alignment:
Q  360 ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaa 455  Q
    |||||||||||||||||||||||||||||   | ||||  || |||||||||||||||||||| ||| || |||||||||||||||||||||||||    
T  45047300 ggtctcacttaagacctcattcttaagtgggccccacacaacattttaataaaataatcattgtttagttatttttgttgaaatgtaaatgataaa 45047205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 478
Target Start/End: Complemental strand, 6078089 - 6077972
Alignment:
Q  360 ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgt 459  Q
    |||||||||||||| |  ||||||||||| | |||||| |||||||||||||||||||||||| | | ||||||||||||||| |||||||| |||  ||    
T  6078089 ggtctcacttaagatcatattcttaagtggacctcacaacactttttaataaaataatcattgttgagttgtttttgttgaaa-gtaaatgacaaagagt 6077991  T
Q  460 tattgatgtgactcattta 478  Q
    ||||| || ||||||||||    
T  6077990 tattggtgggactcattta 6077972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 464
Target Start/End: Original strand, 25479640 - 25479760
Alignment:
Q  346 gtctcataagaccc--ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaat 443  Q
    ||||| ||||||||  ||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||| | |||| | | ||  ||||||||||||    
T  25479640 gtctcttaagacccaaggtttcacttaagaccccattcttaagtggatctcacaccactttttaataaaatagtaattgttgagttacttttgttgaaat 25479739  T
Q  444 gtaaatgataaaatgttattg 464  Q
    ||||||||||||  |||||||    
T  25479740 gtaaatgataaagagttattg 25479760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 360 - 464
Target Start/End: Original strand, 1586389 - 1586497
Alignment:
Q  360 ggtctcacttaagacctc----attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaa 455  Q
    ||||||||||||||||||    ||||||||||| | | ||||  | ||||||||||||||||||||| ||||||  |||| |||||||||||||||||||    
T  1586389 ggtctcacttaagacctcctccattcttaagtggaccccacacaaatttttaataaaataatcattgtttaattacttttattgaaatgtaaatgataaa 1586488  T
Q  456 atgttattg 464  Q
      |||||||    
T  1586489 gagttattg 1586497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 26417136 - 26417216
Alignment:
Q  343 ggggtctcataagacccgg--tctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    |||||||| ||||||||||  |||||||||||||| || ||||||||||| | |||| ||||||| |||||||||||||||    
T  26417136 ggggtctcttaagacccggggtctcacttaagaccccaatcttaagtgaaccccacaccacttttcaataaaataatcatt 26417216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 54998071 - 54998150
Alignment:
Q  344 gggtctcataagacccgg--tctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    ||||||| ||||||||||  ||||||||||||||| | ||||||||| | | |||| || |||| |||||||||||||||    
T  54998071 gggtctcttaagacccggggtctcacttaagaccttaatcttaagtggaacccacaccaattttcaataaaataatcatt 54998150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 37274943 - 37274902
Alignment:
Q  380 tcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    ||||||||| ||| |||||||||||| |||||||||||||||    
T  37274943 tcttaagtggatcccacatcacttttcaataaaataatcatt 37274902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 46061572 - 46061495
Alignment:
Q  377 cattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataa 454  Q
    |||||||||||| ||  ||||  | ||||||||||||||||||||| | | ||  |||||||||||||||||| ||||    
T  46061572 cattcttaagtggataccacactagtttttaataaaataatcattgttgagtttcttttgttgaaatgtaaataataa 46061495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 22702451 - 22702363
Alignment:
Q  376 tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    |||||||| |||| | | ||||| |||||||||||||||||| |||| ||| |   ||||||| |||| |||||||||||  |||||||    
T  22702451 tcattcttgagtggaccccacataactttttaataaaataattattgtttagtcacttttgttaaaatataaatgataaagagttattg 22702363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 22991666 - 22991754
Alignment:
Q  376 tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    |||||||| |||| | | ||||| |||||||||||||||||| |||| ||| |   ||||||| |||| |||||||||||  |||||||    
T  22991666 tcattcttgagtggaccccacataactttttaataaaataattattgtttagtcacttttgttaaaatataaatgataaagagttattg 22991754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 41248328 - 41248380
Alignment:
Q  403 ttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaa 455  Q
    ||||| ||||||||||||||  |  ||| ||||||||||||||||||||||||    
T  41248328 ttttattaaaataatcattgtatttttgcttttgttgaaatgtaaatgataaa 41248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 345 - 463
Target Start/End: Original strand, 377025 - 377146
Alignment:
Q  345 ggtctcataagaccc--ggtctcacttaagac-ctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaa 441  Q
    |||||| ||||||||  ||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||| |||| | ||||| ||||||||||    
T  377025 ggtctcttaagacccaaggtctcacttaagactctcattcttaagtggacctcacaccactttttaataaaataatgattgttgaattgcttttgttgaa 377124  T
Q  442 atgtaaatgataaaatgttatt 463  Q
    | ||||||||||||| ||||||    
T  377125 acgtaaatgataaaaagttatt 377146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 464
Target Start/End: Original strand, 53143466 - 53143589
Alignment:
Q  343 ggggtctcataagacccgg-tctcacttaa-gacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttga 440  Q
    |||||||| ||||||| || |||||||||| ||||||||||||||||| ||| ||||  |||||||||||||||||| |||| ||| ||  |||||||||    
T  53143466 ggggtctcttaagaccggggtctcacttaaagacctcattcttaagtggatcccacacaactttttaataaaataattattgtttagttacttttgttga 53143565  T
Q  441 aatgtaaatgataaaatgttattg 464  Q
    |||||||||||||||  |||||||    
T  53143566 aatgtaaatgataaagagttattg 53143589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 363 - 455
Target Start/End: Original strand, 45707583 - 45707675
Alignment:
Q  363 ctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaa 455  Q
    |||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||| || | | | ||| ||||||||||||||||||||||||    
T  45707583 ctcacttaagacctcatttttaagtggatctcacaccacttcttaataaaataattatcgatgagttgcttttgttgaaatgtaaatgataaa 45707675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 464
Target Start/End: Original strand, 7885899 - 7886004
Alignment:
Q  360 ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatg 458  Q
    |||||||||||||||||| ||||||||||| ||| ||||  |||||||||||||||||| |||| | | ||| |||||||||||| |||||||||||  |    
T  7885899 ggtctcacttaagacctccattcttaagtggatcccacacaactttttaataaaataataattgttgagttgcttttgttgaaatataaatgataaagag 7885998  T
Q  459 ttattg 464  Q
    ||||||    
T  7885999 ttattg 7886004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 48457845 - 48457927
Alignment:
Q  343 ggggtctcataagacccgg--tctcacttaagacct-cattcttaagtgaatctcacatcactttttaataaaataatcattg 422  Q
    |||||||| ||||||||||  ||||||||||||||| |||||||||||| ||||||||  ||||||||||||| |||||||||    
T  48457845 ggggtctcttaagacccggggtctcacttaagaccttcattcttaagtggatctcacacaactttttaataaactaatcattg 48457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 17378751 - 17378670
Alignment:
Q  343 ggggtctcataagaccc--ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    |||||||| ||||||||  | |||||||||||||||| ||||||||||  | | |||||||||||| |||||||||||||||    
T  17378751 ggggtctcttaagacccatgatctcacttaagacctccattcttaagtagaccccacatcacttttaaataaaataatcatt 17378670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 24744584 - 24744521
Alignment:
Q  360 ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattg 422  Q
    ||||| |||||||||||| ||||||||||| ||| ||||  |||||||| ||||||||||||||    
T  24744584 ggtcttacttaagacctccattcttaagtggatcccacactactttttattaaaataatcattg 24744521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 50345891 - 50345951
Alignment:
Q  362 tctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    |||||||||||||||| | |||||||||   | |||| |||||||||||||||||||||||    
T  50345891 tctcacttaagacctccaatcttaagtggtccccacaccactttttaataaaataatcatt 50345951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 479
Target Start/End: Complemental strand, 33494923 - 33494788
Alignment:
Q  346 gtctcataagacccgg--tctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaat 443  Q
    ||||| ||||||||||  |||||||||||||| |||||||||||  ||||||||  |||||||||||||| | |||||| | ||||  ||||||||||||    
T  33494923 gtctcttaagacccggagtctcacttaagaccccattcttaagtagatctcacacaactttttaataaaacagtcattgttgaattacttttgttgaaat 33494824  T
Q  444 gtaaatgataaaatgttattgatgtgactcatttag 479  Q
    |||||| |||||  ||||||| |||| |||||||||    
T  33494823 gtaaataataaagagttattggtgtgcctcatttag 33494788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 467
Target Start/End: Original strand, 5367645 - 5367753
Alignment:
Q  360 ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatg 458  Q
    ||||||| |||||||||| ||||||||||||||   |||  ||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||  |    
T  5367645 ggtctcaattaagacctctattcttaagtgaattctacacaactttttaataaaataatcattgtttagttacttttgttgaaatgtaaatgataaagag 5367744  T
Q  459 ttattgatg 467  Q
    |||||||||    
T  5367745 ttattgatg 5367753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 464
Target Start/End: Complemental strand, 36974311 - 36974209
Alignment:
Q  361 gtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgtt 460  Q
    ||||||||||||||| ||||||||||||| || |||| ||||||||| ||||||||| |||| | | ||| ||||||||||||||||||||||||  |||    
T  36974311 gtctcacttaagaccccattcttaagtga-tcccacaccactttttattaaaataataattgttgagttgcttttgttgaaatgtaaatgataaagagtt 36974213  T
Q  461 attg 464  Q
    ||||    
T  36974212 attg 36974209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 464
Target Start/End: Complemental strand, 4942595 - 4942491
Alignment:
Q  361 gtctcacttaagacc-tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgt 459  Q
    ||||||||||||||| ||||||||||||| | | ||||  ||||||||||||||||||||||  ||| ||  || |||||||||||||||||||||  ||    
T  4942595 gtctcacttaagaccctcattcttaagtggaccccacacaactttttaataaaataatcattatttagttacttatgttgaaatgtaaatgataaagagt 4942496  T
Q  460 tattg 464  Q
    |||||    
T  4942495 tattg 4942491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 39955249 - 39955173
Alignment:
Q  402 tttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattgatgtgactcattta 478  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||| ||||  ||||||| || ||| ||||||    
T  39955249 tttttaataaaataattattggtaagttgtttttgttgaaatgtaaatggtaaatagttattggtgagacccattta 39955173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 478
Target Start/End: Original strand, 15558527 - 15558646
Alignment:
Q  360 ggtctcacttaagacct-cattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatg 458  Q
    ||||||||||||||||| |||| |||| || ||| ||||  ||||||||||||||||||||||| ||| ||  || |||| |||| |||||||||||  |    
T  15558527 ggtctcacttaagaccttcatttttaaatggatcccacacaactttttaataaaataatcattgtttagttacttctgttaaaatataaatgataaagag 15558626  T
Q  459 ttattgatgtgactcattta 478  Q
    |||||| || | ||||||||    
T  15558627 ttattggtgagtctcattta 15558646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 464
Target Start/End: Original strand, 30471695 - 30471785
Alignment:
Q  374 cctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    ||||||| ||||||| | | ||||  ||||||||||||||||||||||| ||| ||  ||||||| ||||||||||||||||  |||||||    
T  30471695 cctcatttttaagtggaccccacacaactttttaataaaataatcattgtttagttacttttgtttaaatgtaaatgataaagagttattg 30471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 464
Target Start/End: Original strand, 38037342 - 38037412
Alignment:
Q  394 cacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    ||||||||||||||||||||||||||||| |   ||| |||| || ||||||||||||||||  |||||||    
T  38037342 cacatcactttttaataaaataatcattgttatgttgcttttattaaaatgtaaatgataaagagttattg 38037412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 360 - 464
Target Start/End: Original strand, 39445797 - 39445901
Alignment:
Q  360 ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgt 459  Q
    |||||||||||||||| |||||||||||| | | ||||  ||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||  ||    
T  39445797 ggtctcacttaagaccccattcttaagtggaccccacacaactttttaataaaataatcattgtttagttatttttgttgaaatgtaaataataaagagt 39445896  T
Q  460 tattg 464  Q
    |||||    
T  39445897 tattg 39445901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 45154268 - 45154354
Alignment:
Q  378 attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    ||||||||||| | |  ||| ||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||  |||||||    
T  45154268 attcttaagtggaacctacaccactttttaataaaataattattgttgaattgtttttgttgaaatgtaaataataaagagttattg 45154354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 37847903 - 37847976
Alignment:
Q  382 ttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaa 455  Q
    ||||||| |||||||| ||||||||| |||||||||||| | | | ||||||||||| ||||||||||||||||    
T  37847903 ttaagtggatctcacaccactttttattaaaataatcatcgttgagttgtttttgttaaaatgtaaatgataaa 37847976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 18379775 - 18379852
Alignment:
Q  347 tctcataagaccc--ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattg 422  Q
    |||||||||||||  ||||| | |||||||| | |||||||||||||||||||| |||||||| |||||||||||||||    
T  18379775 tctcataagacccatggtcttagttaagacccccattcttaagtgaatctcacaccacttttt-ataaaataatcattg 18379852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 439
Target Start/End: Complemental strand, 11512119 - 11512019
Alignment:
Q  343 ggggtctcataagaccc--ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattggtt-aattgtttttgtt 438  Q
    |||||||| ||||||||  ||||| |||||||||| | | ||||||||| | | |||| ||||||| |||||||||||||||| || |||||||||||||    
T  11512119 ggggtctcttaagacccagggtctaacttaagacccccaatcttaagtggaccccacaccacttttcaataaaataatcattgtttaaattgtttttgtt 11512020  T
Q  439 g 439  Q
    |    
T  11512019 g 11512019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 42710664 - 42710562
Alignment:
Q  362 tctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgtta 461  Q
    |||||||||||||  |||||||||||||| | ||||  ||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||  ||||    
T  42710664 tctcacttaagactccattcttaagtgaaccccacacaactttttaataaaataatcattgttgaattacttttgttgaaatgtaaatgataaagagtta 42710565  T
Q  462 ttg 464  Q
    |||    
T  42710564 ttg 42710562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 476
Target Start/End: Complemental strand, 34975713 - 34975599
Alignment:
Q  361 gtctcacttaagacc-tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgt 459  Q
    ||||||||||||||| ||||||||||||| |||||||  |||||||||| ||||| ||||||| | ||||| |||||||||||| | |||||||||  ||    
T  34975713 gtctcacttaagaccctcattcttaagtggatctcac--cactttttaaaaaaatcatcattgttgaattgcttttgttgaaatattaatgataaagagt 34975616  T
Q  460 tattgatgtgactcatt 476  Q
    |||||||| || |||||    
T  34975615 tattgatgggattcatt 34975599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 464
Target Start/End: Complemental strand, 17604013 - 17603891
Alignment:
Q  343 ggggtctcataagacccgg-tctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaa 441  Q
    |||||||| |||||||||| |||||||||||||  |||||||||||| | | || |  |||| |||||||||||||||||| ||| ||  |||| |||||    
T  17604013 ggggtctcttaagacccgggtctcacttaagactccattcttaagtggaccacatacaacttgttaataaaataatcattgtttagttacttttattgaa 17603914  T
Q  442 atgtaaatgataaaatgttattg 464  Q
    ||||||||||||||  |||||||    
T  17603913 atgtaaatgataaagagttattg 17603891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 361 - 464
Target Start/End: Complemental strand, 25796000 - 25795898
Alignment:
Q  361 gtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgtt 460  Q
    |||||| |||||||| ||||| |||||| | | ||||  ||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||  |||    
T  25796000 gtctcatttaagacc-cattcataagtggaccccacacaactttctaataaaataatcattgtttagttatttttgttgaaatgtaaatgataaagagtt 25795902  T
Q  461 attg 464  Q
    ||||    
T  25795901 attg 25795898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 479
Target Start/End: Complemental strand, 9486995 - 9486875
Alignment:
Q  360 ggtctcacttaagacc-tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatg 458  Q
    |||||||||||||||| |||||| |||||  | ||||||  |||| ||| ||||||||||||||  |   |||||||||| ||||||||||||||||  |    
T  9486995 ggtctcacttaagaccctcattcgtaagttgacctcacaaaacttattattaaaataatcattgtattgatgtttttgttaaaatgtaaatgataaagag 9486896  T
Q  459 ttattgatgtgactcatttag 479  Q
    |||||| |||  |||||||||    
T  9486895 ttattggtgtagctcatttag 9486875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 464
Target Start/End: Complemental strand, 33174234 - 33174130
Alignment:
Q  360 ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgt 459  Q
    ||||||||||||||| |||||||||||||   | ||||  |||||||  ||||||||||||||  |  ||| ||||||||||||||| ||||||||  ||    
T  33174234 ggtctcacttaagacatcattcttaagtgggccccacaatactttttcttaaaataatcattgtattgttgcttttgttgaaatgtatatgataaagagt 33174135  T
Q  460 tattg 464  Q
    |||||    
T  33174134 tattg 33174130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 958198 - 958117
Alignment:
Q  343 ggggtctcataagaccc--ggtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattg 422  Q
    |||||||| ||||||||  ||||| |||||||||| || ||||||||| | | ||||  |||||| ||||||||||||||||    
T  958198 ggggtctcttaagacccagggtctaacttaagaccccaatcttaagtggaccacacacaacttttcaataaaataatcattg 958117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 36655617 - 36655675
Alignment:
Q  361 gtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatca 419  Q
    ||||||||||||||||||| |||||||| ||  ||||| |||||| | |||||||||||    
T  36655617 gtctcacttaagacctcatgcttaagtggattccacattacttttgattaaaataatca 36655675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 37503833 - 37503895
Alignment:
Q  360 ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    |||||||||||||||| | | ||||||||| ||| |||| ||||||| |||||||||||||||    
T  37503833 ggtctcacttaagacccccaatcttaagtggatcccacaccacttttcaataaaataatcatt 37503895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 46209166 - 46209118
Alignment:
Q  368 ttaagacctcattcttaagtgaatctcacatcactttttaataaaataat 417  Q
    |||||||||||||||||| || ||| |||||||||||||| |||||||||    
T  46209166 ttaagacctcattcttaaatggatc-cacatcactttttattaaaataat 46209118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 33326587 - 33326527
Alignment:
Q  362 tctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattg 422  Q
    ||||||||||||||||| ||||||||| ||  ||||  |||||| | ||||||||||||||    
T  33326587 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattg 33326527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 31206513 - 31206421
Alignment:
Q  364 tcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaa 456  Q
    |||||||||||  ||||||||||||  |||||||| ||||||||||||||||||||||| | | || ||||||||||||| ||||||||||||    
T  31206513 tcacttaagactccattcttaagtgggtctcacattactttttaataaaataatcattgttgagttctttttgttgaaatataaatgataaaa 31206421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 33603619 - 33603507
Alignment:
Q  367 cttaagacc-tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattga 465  Q
    ||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||||  |||||||     
T  33603619 cttaagaccatcatttttaagtggacctcacatcactttttaataaaataatcattgtttggttacttttgttgaaatgtaaatgataaagagttattgg 33603520  T
Q  466 tgtgactcattta 478  Q
    | |||| ||||||    
T  33603519 tatgacccattta 33603507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 478
Target Start/End: Complemental strand, 5041135 - 5041021
Alignment:
Q  365 cacttaagacctca-ttcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttatt 463  Q
    ||||||||||| || |||||| ||| ||| |||  |||||||||||||||||||||||| | | |||||||||||||||| |||||||||||| ||||||    
T  5041135 cacttaagaccccaattcttacgtggatcccactccactttttaataaaataatcattgttgagttgtttttgttgaaatataaatgataaaaagttatt 5041036  T
Q  464 gatgtgactcattta 478  Q
    | || || |||||||    
T  5041035 ggtgggattcattta 5041021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 32913784 - 32913897
Alignment:
Q  345 ggtctcataagaccc--ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaa 441  Q
    |||||| ||||||||  ||||| |||||||||||| |||||||||||  || | |||||||||||||||||||||||| || | | ||| ||||||||||    
T  32913784 ggtctcttaagacccaaggtcttacttaagacctccattcttaagtgggtcccgcatcactttttaataaaataatcactgttgagttgcttttgttgaa 32913883  T
Q  442 atgtaaatgataaa 455  Q
    ||||||||||||||    
T  32913884 atgtaaatgataaa 32913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 477
Target Start/End: Original strand, 7789688 - 7789772
Alignment:
Q  393 tcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattgatgtgactcattt 477  Q
    |||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||  ||||||| ||  ||||||||    
T  7789688 tcacatcactttttaataaaataatcattgttgagttgcttttgttgaaatgtaaatgataaagagttattggtgatactcattt 7789772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 5114175 - 5114077
Alignment:
Q  376 tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattgatgtgactcat 475  Q
    ||||||||||||||| |||||| || |||||||||||||||| |||| | | ||||||||||||||||||||||||| ||  ||||||| || |||||||    
T  5114175 tcattcttaagtgaacctcaca-caatttttaataaaataattattgttgagttgtttttgttgaaatgtaaatgatgaagagttattggtgagactcat 5114077  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 464
Target Start/End: Complemental strand, 7712415 - 7712293
Alignment:
Q  345 ggtctcataagaccc--ggtctcacttaagacctca-ttcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaa 441  Q
    |||||| ||||||||  |||||||||||||||| || |||||||||| |   ||||  |||||| |||||||||||||||  | | ||||||||||||||    
T  7712415 ggtctcttaagacccagggtctcacttaagaccccaattcttaagtggactccacacaacttttaaataaaataatcattattgagttgtttttgttgaa 7712316  T
Q  442 atgtaaatgataaaatgttattg 464  Q
    ||||||||||||||| |||||||    
T  7712315 atgtaaatgataaaaagttattg 7712293  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 478
Target Start/End: Complemental strand, 33259634 - 33259497
Alignment:
Q  343 ggggtctcataagacccgg--tctcacttaaga-cctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttg 439  Q
    |||||||| ||||||||||  ||||||||| || || |||||||||||| | | |||| |||||||||||||||||| ||||| | | ||  ||||||||    
T  33259634 ggggtctcttaagacccggggtctcacttatgatccccattcttaagtggaccccacaccactttttaataaaataa-cattgttgagttacttttgttg 33259536  T
Q  440 aaatgtaaatgataaaatgttattgatgtgactcattta 478  Q
    |||||||||||||||||  |||||| || | ||||||||    
T  33259535 aaatgtaaatgataaaaaattattggtgggtctcattta 33259497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 478
Target Start/End: Complemental strand, 33279793 - 33279656
Alignment:
Q  343 ggggtctcataagacccgg--tctcacttaaga-cctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttg 439  Q
    |||||||| ||||||||||  ||||||||| || || |||||||||||| | | |||| |||||||||||||||||| ||||| | | ||  ||||||||    
T  33279793 ggggtctcttaagacccggggtctcacttatgatccccattcttaagtggaccccacaccactttttaataaaataa-cattgttgagttacttttgttg 33279695  T
Q  440 aaatgtaaatgataaaatgttattgatgtgactcattta 478  Q
    |||||||||||||||||  |||||| || | ||||||||    
T  33279694 aaatgtaaatgataaaaaattattggtgggtctcattta 33279656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 454
Target Start/End: Complemental strand, 42483868 - 42483792
Alignment:
Q  376 tcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataa 454  Q
    |||||||||| || ||| ||||  |||||||| ||||||||||||||  | ||||||||||||||||||||||||||||    
T  42483868 tcattcttaaatggatcccaca--actttttattaaaataatcattgtattattgtttttgttgaaatgtaaatgataa 42483792  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 479
Target Start/End: Original strand, 8444908 - 8444987
Alignment:
Q  400 actttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattgatgtgactcatttag 479  Q
    |||||||| |||||||||||| |    ||||||||||||||||||||||| |||||  |||||||||| |||| ||||||    
T  8444908 actttttattaaaataatcatcgtagtattgtttttgttgaaatgtaaataataaagagttattgatgagacttatttag 8444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 37583221 - 37583160
Alignment:
Q  361 gtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattg 422  Q
    ||||||||||||||| |||| ||||||| | ||||||  |||||||| ||||||||||||||    
T  37583221 gtctcacttaagaccccatttttaagtggacctcacactactttttattaaaataatcattg 37583160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 438
Target Start/End: Complemental strand, 51244267 - 51244187
Alignment:
Q  360 ggtctcacttaaga-cctcattcttaagtgaatctcacatcactttttaataaaataatcattggtt-aattgtttttgtt 438  Q
    |||||||||||||| ||||| ||||||||| | | |||| ||||||| |||||||||||||||  || |||||||||||||    
T  51244267 ggtctcacttaagatcctcaatcttaagtggaccccacaccacttttcaataaaataatcattatttgaattgtttttgtt 51244187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 35615676 - 35615614
Alignment:
Q  360 ggtctcacttaagacc-tcattcttaagtgaatctcacatcactttttaataaaataatcatt 421  Q
    ||||| |||||||||| ||||| ||||||| ||| |||| ||||||| |||||||||||||||    
T  35615676 ggtcttacttaagaccctcatttttaagtggatcccacaccacttttaaataaaataatcatt 35615614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 3582265 - 3582321
Alignment:
Q  361 gtctcacttaagacctcattcttaagtgaatctcacatcactttttaataaaataat 417  Q
    ||||||| |||||||||| ||||||||  | | |||||||||||| |||||||||||    
T  3582265 gtctcacataagacctcaatcttaagtagaccccacatcacttttcaataaaataat 3582321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 360 - 467
Target Start/End: Original strand, 24141322 - 24141430
Alignment:
Q  360 ggtctcacttaagacct-cattcttaagtgaatctc-acatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaat 457  Q
    ||||||||||||||||| ||||||||||||  |||| |||  ||||||||||||||||||||||| ||| ||  |||| |||||||||||||||||||      
T  24141322 ggtctcacttaagaccttcattcttaagtgg-tctccacacaactttttaataaaataatcattgtttagttacttttattgaaatgtaaatgataaaga 24141420  T
Q  458 gttattgatg 467  Q
    ||||||||||    
T  24141421 gttattgatg 24141430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 360 - 464
Target Start/End: Complemental strand, 31632501 - 31632396
Alignment:
Q  360 ggtctcacttaagacctc-attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatg 458  Q
    |||| ||||||||||| | ||||||||||| ||| ||||  | ||||||||||||||||||||  | ||||| ||||||||||||||||||||||||  |    
T  31632501 ggtcacacttaagacccccattcttaagtggatcccacacaattttttaataaaataatcattattgaattgcttttgttgaaatgtaaatgataaagag 31632402  T
Q  459 ttattg 464  Q
    ||||||    
T  31632401 ttattg 31632396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 479
Target Start/End: Complemental strand, 11703333 - 11703231
Alignment:
Q  377 cattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattgatgtgactcatt 476  Q
    |||| ||||||| ||| ||||  ||||||||||||||||||||||| ||| ||  ||||||| ||||||||||||||||  ||||||| || | ||||||    
T  11703333 catttttaagtggatcccacacaactttttaataaaataatcattgtttagttacttttgttaaaatgtaaatgataaagagttattggtgggtctcatt 11703234  T
Q  477 tag 479  Q
    |||    
T  11703233 tag 11703231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 455
Target Start/End: Complemental strand, 33099680 - 33099586
Alignment:
Q  362 tctcacttaagac-ctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaa 455  Q
    ||||||||||||| |||||||||||||| | | ||   || |||||| |||||||||||||| | | ||||||||||||||||||||||||||||    
T  33099680 tctcacttaagacactcattcttaagtggaccccatgccattttttattaaaataatcattgttgagttgtttttgttgaaatgtaaatgataaa 33099586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 479
Target Start/End: Original strand, 30250260 - 30250380
Alignment:
Q  368 ttaagacctcattcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttg---------aaatgtaaatgataaaatg 458  Q
    ||||||||  ||||||||||| |||||||| |||||||||||||||||||||||| | | ||||||| ||||         ||||||||||||||||  |    
T  30250260 ttaagaccctattcttaagtggatctcacaccactttttaataaaataatcattgttgagttgttttagttgctttccttaaaatgtaaatgataaagag 30250359  T
Q  459 ttattgatgtgactcatttag 479  Q
    ||||||||| ||| |||||||    
T  30250360 ttattgatgagacacatttag 30250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 464
Target Start/End: Complemental strand, 5015 - 4892
Alignment:
Q  345 ggtctcataagaccc--ggtctcacttaaga-cctcattcttaagtgaatctcacatcactttttaa-taaaataatcattggttaattgtttttgttga 440  Q
    |||||| ||||||||  |||||||||||||| |||||||||||||||   |  ||| || ||||||| |||||||||||||| | | |||||||||||||    
T  5015 ggtctcctaagacccagggtctcacttaagatcctcattcttaagtggccccaacaccattttttaaataaaataatcattgttgagttgtttttgttga 4916  T
Q  441 aatgtaaatgataaaatgttattg 464  Q
    | |||||||||||||  |||||||    
T  4915 attgtaaatgataaagagttattg 4892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 224 - 310
Alignment:
Q  378 attcttaagtgaatctcacatcactttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    ||||||||||| | | ||||  ||||||||||||||||||||||| ||| ||  |||| |||||||||||||||||||  |||||||    
T  224 attcttaagtggaccccacacaactttttaataaaataatcattgtttagttacttttattgaaatgtaaatgataaagagttattg 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 464
Target Start/End: Complemental strand, 1421985 - 1421923
Alignment:
Q  402 tttttaataaaataatcattggttaattgtttttgttgaaatgtaaatgataaaatgttattg 464  Q
    ||||||||||| ||||||||| | | ||| ||||||||||||||||||||||||  |||||||    
T  1421985 tttttaataaattaatcattgttgagttgcttttgttgaaatgtaaatgataaagagttattg 1421923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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