View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_26 (Length: 405)
Name: NF14819_high_26
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 26424979 - 26424723
Alignment:
| Q |
17 |
atgaaaggccttaaatgaaggaacaccagaactnnnnnnnnt-aactagagcaataagactaggaggggagccactcgatacaaaagttaaacaccaccc |
115 |
Q |
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| T |
26424979 |
atgaaaggccttaaatgaaggaacaccagaactaaaaaaaaagaactaaagcaataagactaggaggggagccactcgatacaaaagttaaacaccaccc |
26424880 |
T |
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| Q |
116 |
caaaatttattcttgaaacttattaaattgattcatatctttattagaagcttatgtttgagtttatggttctttacacattttgcgagttatggaaatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26424879 |
caaaatttattcttgaaacttattaaattgattcatatccttattagaagcttatgtttgagtttatggttctttacacattttgtgagttatggaaatt |
26424780 |
T |
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| Q |
216 |
aaaatcaaagaaagagtagaggtttcctttctcaagtgttttggaattttcttttgt |
272 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26424779 |
aaaatcaaagaaagagtagagatttcctttctcaagtgttttggaattttcttttgt |
26424723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 367
Target Start/End: Complemental strand, 26424657 - 26424628
Alignment:
| Q |
338 |
gtgatgaacaaagacataagagagaggact |
367 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26424657 |
gtgatgaacaaagacataagagagaggact |
26424628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 6652923 - 6652894
Alignment:
| Q |
135 |
ttattaaattgattcatatctttattagaa |
164 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
6652923 |
ttattaaattgattcatatctttattagaa |
6652894 |
T |
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