View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_high_27 (Length: 402)
Name: NF14819_high_27
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 30416401 - 30416158
Alignment:
| Q |
11 |
agatgaagaagttgttgcatgcaaattgaagggcgttgctgaaagtgtagacatcaatgttcgtttcttcaatggttcaaagttttgtgttgaagctgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30416401 |
agatgaagaagttgttgcatgcaaattgaagggcgttgctgaaagtgtagacatcaatgttcgtttcttcaatggttcaaagttttgtgttgaagctgca |
30416302 |
T |
|
| Q |
111 |
ctcgaatccacagttgaatccttcaaagagcttgtcgttcgaaactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcaga |
210 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30416301 |
ctcgaatcc------------ttcaaagagcttgtcgttggaaactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcaga |
30416214 |
T |
|
| Q |
211 |
atcatcaatcccttaaaagctaaggtacattctattttctcatgttgtcttgttac |
266 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30416213 |
atcatcaatcccataaaagctatggtacattctattttctcatgttgtcttgttac |
30416158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 31244814 - 31244559
Alignment:
| Q |
11 |
agatgaagaagttgttgcatgcaaattgaagggcgttgctgaaagtgtagacatcaatgttcgtttcttcaatggttcaaagttttgtgttgaagctgca |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31244814 |
agataaagaagttgctgcatgcaaattgaagggcgtcgctgaaagtgtaaacatcaatgttcgttacttcaatggttcaaagttttgtgttgaagctgca |
31244715 |
T |
|
| Q |
111 |
ctcgaatccacagttgaatccttcaaagagcttgtcgttcgaaactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcaga |
210 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
31244714 |
ctagaatccacagttgaatccttcaaacagcttatcattggaaactgtgacatcccaatccaaaatcaaagactcatttacaagggaaacatcttgcaga |
31244615 |
T |
|
| Q |
211 |
atcatcaatcccttaaaagctaaggtacattctattttctcatgttgtcttgttac |
266 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31244614 |
ataatcaatccctgcaaagctatggtacattctattttctcatgttgtcttgttac |
31244559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 30416083 - 30416040
Alignment:
| Q |
341 |
actaaaaatgtcttgcttatggatgattaatgttcagagttagg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30416083 |
actaaaaatgtcttgcttatggatgattaatgttcagagttagg |
30416040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 7206943 - 7206881
Alignment:
| Q |
160 |
acatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcagaatcatcaatccctt |
224 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
7206943 |
acatcccaatacaaaatcaaagactcatttacaa-cgaaaaat-ttgcagaataatcaatccctt |
7206881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University