View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_28 (Length: 394)
Name: NF14819_high_28
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 4 - 377
Target Start/End: Complemental strand, 6137523 - 6137150
Alignment:
| Q |
4 |
ccaagaatatctaagaagcttctacgatacactcataaattgatgtgtacatattgcttttttaaatctattaatttgccttggtaaacaaaatgaaaaa |
103 |
Q |
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| T |
6137523 |
ccaagaatatctaagaagcttctacgatacactcacaaattgatgtgtacatattgctattttaaatctattaatttgccttggtaaacaaaatgaaaaa |
6137424 |
T |
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| Q |
104 |
tagcttatcttatatttaacattaatctctaaattaatatcaatttttatcaagccctaagatatatatactaattacaaaaatgagctttgtagaatat |
203 |
Q |
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| T |
6137423 |
tagcttatcctatatttaacattaatctctaaattaatatcaatttttatcaagccctaagatatatatactaattacaaaaatgagctttatagaatat |
6137324 |
T |
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| Q |
204 |
ttcatacgtacggttgaaagggtcctgtacggtaccaccaaagccaagtgttgaaaaccaaaacatccatttgtttccataagtttccacttttaaggga |
303 |
Q |
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| T |
6137323 |
ttcatacgtacggttgaaagggtcctgtacggtaccaccaaagccaagtgttgaaaaccaaaacatccatttgtttccataagtttccacttttaaggga |
6137224 |
T |
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| Q |
304 |
atcaagtttcaatactctaccaatcttttccacttcaatgtcaaccaaatatgtagtatggtggacaataattg |
377 |
Q |
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| T |
6137223 |
atcaagtttcaatactctaccaatcttttccacttcaatgtcaaccaaatatgtactatggtggacaataattg |
6137150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 4 - 377
Target Start/End: Original strand, 13285075 - 13285451
Alignment:
| Q |
4 |
ccaagaatatctaagaagcttctacgatacactcataaattgatgtgtacatattgcttttttaaatctattaatttgccttggtaaacaaaatgaaaa- |
102 |
Q |
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| T |
13285075 |
ccaagaatatctaaaaagcttctacgatacactcacaaattgatgtgtacatattgcttttttaaatctattaatttgccttggtaaacaaaatgaaaaa |
13285174 |
T |
|
| Q |
103 |
--atagcttatcttatatttaacattaatctctaaattaatatcaatttttatcaagccctaagatatatatactaattacaaaaatgagctttgtagaa |
200 |
Q |
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| T |
13285175 |
aaatagcttatcctatatttaacattaatctctaaattaatatcaatttttatcaagccctaagatatatatactaattacaaaaatgagctttatagaa |
13285274 |
T |
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| Q |
201 |
tatttcatacgtacggttgaaagggtcctgtacggtaccaccaaagccaagtgttgaaaaccaaaacatccatttgtttccataagtttccacttttaag |
300 |
Q |
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| T |
13285275 |
tatttcatacgtacggttgaaagggtcctgtacggtaccaccaaagccaagtgttgaaaaccaaaacatccatttgtttccataagtttccacttttaag |
13285374 |
T |
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| Q |
301 |
ggaatcaagtttcaatactctaccaatcttttccacttcaatgtcaaccaaatatgtagtatggtggacaataattg |
377 |
Q |
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| T |
13285375 |
ggaatcaagtttcaatactctaccaatcttttccacttcaatgtcaaccaaatatgtagtatggtggacaataattg |
13285451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 233 - 374
Target Start/End: Complemental strand, 6130432 - 6130291
Alignment:
| Q |
233 |
cggtaccaccaaagccaagtgttgaaaaccaaaacatccatttgtttccataagtttccacttttaagggaatcaagtttcaatactctaccaatctttt |
332 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6130432 |
cggtaccaccaaagccaagtgttgaaaaccaatacatccatttgtttccataagtttccacttttaatggaatcaagtttcaatactctaccaatctttt |
6130333 |
T |
|
| Q |
333 |
ccacttcaatgtcaaccaaatatgtagtatggtggacaataa |
374 |
Q |
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|| ||||||||||||||||||||||| |||||| |||||||| |
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| T |
6130332 |
ccccttcaatgtcaaccaaatatgtactatggtagacaataa |
6130291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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