View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_29 (Length: 394)
Name: NF14819_high_29
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_29 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 4439767 - 4439374
Alignment:
| Q |
1 |
caaggtaaggcccaatgacaggacaaacccaagtgtcaagtgaatgatcatgaaaattgtcgtcgttgataacggaatgagcacagtggagacgcatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439767 |
caaggtaaggcccaatgacaggacaaacccaagtgtcaagtgaatgatcatgaaaattgtcgtcgttgataacggaatgagcacagtggagacgcatctt |
4439668 |
T |
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| Q |
101 |
ccgaatgccgcgaggattacgaaggagggtaagcaccctggtcaccagaaaaacaaactttttgagttcgatggggttatcagagtagagggagtcatca |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439667 |
ccgaatgccgcgaggattaggaaggagggtaagcaccccggtcaccagaaaaacaaactttttgagttcgatggggttatcagagtagagggagtcatca |
4439568 |
T |
|
| Q |
201 |
tagaaatctagcacacggagatgttgccaaaggtgtcgccatcggtgagacagacagccagtggtaacagcggttttggtaaggaggcatgacaggatgt |
300 |
Q |
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| T |
4439567 |
tagaaatctagcacacggagatgttgccaaaggtgtcgccatcggtgagacagacagccagtggtaacagcggttttggtaaggaggcatgacaggatgt |
4439468 |
T |
|
| Q |
301 |
ggttgagcacatcgtctggtaaattactgatcctgtcttcttcttctaatgcttttcgttgtttggagttcgactctgccattgtcgtttgaac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439467 |
ggttgagcacatcgtctggtaaattactgatcctgtcttcttcttctaatgcttttcgttgtttggagttcgactctgccattgtcgtttgaac |
4439374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 383
Target Start/End: Original strand, 4414029 - 4414154
Alignment:
| Q |
261 |
gtggtaacagcggttttggtaaggaggcatgacaggatgtggttgagcacatcgtctggtaaattactgatcctgtctt---cttcttctaatgcttttc |
357 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||| |||| |
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| T |
4414029 |
gtggcaacaacggttttggtagggaggcatgacaggatgtggttaagcacatcgtcgggtaaattactgatcctgtcttcttcttcttcagatgtttttt |
4414128 |
T |
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| Q |
358 |
gttgtttggagttcgactctgccatt |
383 |
Q |
| |
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| T |
4414129 |
ctcgtttggagttcgactctgccatt |
4414154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 32850143 - 32850241
Alignment:
| Q |
247 |
gagacagacagccagtggtaacagcggttttggtaaggaggcatgacaggatgtggttgagcacatcgtctggtaaattactgatcctgtcttcttctt |
345 |
Q |
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||||||||| ||| |||| ||| |||||||||||| |||||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
32850143 |
gagacagacggccggtggcaactgcggttttggtagggaggcatgacaagatgttgttgagcacatcgtcaggtaacttactgatcctatcttcttctt |
32850241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 340
Target Start/End: Complemental strand, 17468018 - 17467905
Alignment:
| Q |
227 |
ccaaaggtgtcgccatcggtgagacagacagccagtggtaacagcggttttggtaaggaggcatgacaggatgtggttgagcacatcgtctggtaaatta |
326 |
Q |
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||||||||| ||||||||| |||| |||| ||| || ||||| ||||||||||| | ||| ||| ||||||||||| || | | |||||||||||||| |
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| T |
17468018 |
ccaaaggtggcgccatcggcgagatagacggcctgttgtaacggcggttttggttggaaggagtgataggatgtggttcagtaaaccgtctggtaaatta |
17467919 |
T |
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| Q |
327 |
ctgatcctgtcttc |
340 |
Q |
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||||| |||||||| |
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| T |
17467918 |
ctgattctgtcttc |
17467905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 343
Target Start/End: Complemental strand, 4453705 - 4453580
Alignment:
| Q |
218 |
gagatgttgccaaaggtgtcgccatcggtgagacagacagccagtggtaacagcggttttggtaaggaggcatgacaggatgtggttgagcacatcgtct |
317 |
Q |
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|||||| | ||| ||||| |||||||| |||| |||| |||||||| ||| ||| |||| | |||| |||| | ||| |||||||||| | | ||| |
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| T |
4453705 |
gagatgcttccagaggtggcgccatcgacgagatagacggccagtggcaactgcgtctttgatcgggagtaatgataagatctggttgagcagaccatct |
4453606 |
T |
|
| Q |
318 |
ggtaaattactgatcctgtcttcttc |
343 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
4453605 |
ggtaaattactgatcctgtcttcttc |
4453580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 198 - 391
Target Start/End: Original strand, 8396524 - 8396720
Alignment:
| Q |
198 |
tcatagaaatctagcacacggagatgttgccaaaggtgtcgccatcggtgagacagacagccagtggtaacagcggttttggtaaggaggcatgacagga |
297 |
Q |
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|||||||||||||||||| ||||||||| |||||||||| |||||||| |||| |||| |||||||| |||| |||||||| ||||| ||||||||| |
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| T |
8396524 |
tcatagaaatctagcacatggagatgtttccaaaggtgttgccatcggcgagaaagacggccagtggaaacaatagttttggtcgggaggtatgacagga |
8396623 |
T |
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| Q |
298 |
tgtggttgagcacatcgtctggtaaattactgatcctgtcttct---tcttctaatgcttttcgttgtttggagttcgactctgccattgtcgtttg |
391 |
Q |
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| T |
8396624 |
tgtggttgaggacatcctctggtaaactactaatcctgtcatctttctcttccgatgcttttcgtcgttttgaatttgactctgccattgttgtttg |
8396720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 8369217 - 8369356
Alignment:
| Q |
198 |
tcatagaaatctagcacacggagatgttgccaaaggtgtcgccatcggtgagacagacagccagtggtaacagcggttttggtaaggaggcatgacagga |
297 |
Q |
| |
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|||| ||||||||||||| ||||||||| |||||||||| |||| || |||| |||| ||| |||| ||||| |||||| | | ||| ||||||||| |
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| T |
8369217 |
tcattgaaatctagcacatggagatgtttccaaaggtgttgccactggcgagatagacggccggtggcaacagtagttttgatcggaaggtatgacagga |
8369316 |
T |
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| Q |
298 |
tgtggttgagcacatcgtctggtaaattactgatcctgtc |
337 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||| |
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| T |
8369317 |
tgtggttgaggacatcgtctggtaaactactgatcctgtc |
8369356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 8396336 - 8396460
Alignment:
| Q |
3 |
aggtaaggcccaatgacaggacaaacccaagtgtcaagtgaatgatcatgaaaattgtcgtcgttgataacggaatgagcacagtggagacgcatcttcc |
102 |
Q |
| |
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|||| |||||||||||| || ||||||| |||||| |||| | || | ||||||| ||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
8396336 |
aggtgaggcccaatgacgacacgaacccaactgtcaactgaacgggcacgtaaattgttgtcgttgataatggagtgagcacagttaagacgcatcttcc |
8396435 |
T |
|
| Q |
103 |
gaatgccgcgaggattacgaaggag |
127 |
Q |
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| T |
8396436 |
gaatgccgctgggattacgtaggag |
8396460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 8369024 - 8369125
Alignment:
| Q |
8 |
aggcccaatgacaggacaaacccaagtgtcaagtgaatgatcatgaaaattgtcgtcgttgataacggaatgagcacagtggagacgcatcttccgaatg |
107 |
Q |
| |
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|||||||||||||| || |||||||||||||| || ||| | | ||||||||||| | || || ||| ||||||||| |||||||| ||||||||| |
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| T |
8369024 |
aggcccaatgacagaacgaacccaagtgtcaactgtatgggaacggaaattgtcgtcatcgacaagggagtgagcacaggtaagacgcattttccgaatg |
8369123 |
T |
|
| Q |
108 |
cc |
109 |
Q |
| |
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|| |
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|
| T |
8369124 |
cc |
8369125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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