View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_high_3 (Length: 598)

Name: NF14819_high_3
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_high_3
NF14819_high_3
[»] chr3 (19 HSPs)
chr3 (208-575)||(45168159-45168530)
chr3 (5-129)||(45168609-45168734)
chr3 (213-338)||(39913337-39913461)
chr3 (304-387)||(2472720-2472800)
chr3 (217-328)||(41218665-41218774)
chr3 (262-328)||(5128814-5128879)
chr3 (212-328)||(53012882-53012996)
chr3 (213-328)||(3068994-3069107)
chr3 (212-328)||(43304079-43304191)
chr3 (219-328)||(43306791-43306898)
chr3 (212-311)||(3063872-3063970)
chr3 (218-311)||(25857653-25857746)
chr3 (218-312)||(19795115-19795208)
chr3 (337-387)||(5128916-5128966)
chr3 (337-387)||(43303992-43304042)
chr3 (337-413)||(43306677-43306754)
chr3 (214-311)||(19949861-19949957)
chr3 (214-269)||(19999262-19999317)
chr3 (283-325)||(40593564-40593605)
[»] chr8 (28 HSPs)
chr8 (212-328)||(22921969-22922084)
chr8 (214-332)||(6845195-6845311)
chr8 (212-306)||(42890253-42890347)
chr8 (212-324)||(22926771-22926880)
chr8 (232-328)||(42891783-42891878)
chr8 (218-328)||(22512165-22512275)
chr8 (290-413)||(18468611-18468732)
chr8 (215-332)||(37189725-37189841)
chr8 (218-328)||(18180802-18180910)
chr8 (218-312)||(23573445-23573538)
chr8 (304-385)||(20693776-20693855)
chr8 (278-328)||(22520918-22520967)
chr8 (337-400)||(23570591-23570654)
chr8 (337-387)||(2189753-2189803)
chr8 (304-387)||(2687719-2687800)
chr8 (337-387)||(22926680-22926730)
chr8 (218-328)||(23570449-23570554)
chr8 (304-387)||(24731204-24731285)
chr8 (337-387)||(42890399-42890449)
chr8 (337-387)||(42891696-42891746)
chr8 (337-409)||(16598256-16598329)
chr8 (337-413)||(22921855-22921932)
chr8 (306-368)||(2609546-2609605)
chr8 (337-400)||(22512065-22512128)
chr8 (337-400)||(22519365-22519428)
chr8 (337-413)||(6845343-6845420)
chr8 (304-366)||(14130142-14130201)
chr8 (269-328)||(26150601-26150660)
[»] chr1 (20 HSPs)
chr1 (212-328)||(50857563-50857678)
chr1 (212-332)||(8931080-8931195)
chr1 (295-386)||(31915518-31915606)
chr1 (304-393)||(10927171-10927256)
chr1 (337-413)||(8931227-8931304)
chr1 (218-328)||(13441718-13441826)
chr1 (304-387)||(12944093-12944174)
chr1 (310-393)||(28660771-28660852)
chr1 (304-383)||(23987549-23987630)
chr1 (309-387)||(31913359-31913434)
chr1 (304-388)||(8221465-8221547)
chr1 (308-387)||(26981490-26981568)
chr1 (279-325)||(12486347-12486392)
chr1 (304-387)||(50713690-50713771)
chr1 (337-386)||(13444021-13444070)
chr1 (230-328)||(13444107-13444203)
chr1 (278-311)||(42071456-42071489)
chr1 (337-387)||(43681468-43681520)
chr1 (337-413)||(50857449-50857526)
chr1 (341-385)||(9194976-9195020)
[»] scaffold0110 (2 HSPs)
scaffold0110 (218-387)||(46765-46932)
scaffold0110 (218-332)||(45376-45490)
[»] chr6 (22 HSPs)
chr6 (212-332)||(3535891-3536009)
chr6 (212-332)||(3542102-3542220)
chr6 (218-333)||(30052064-30052179)
chr6 (218-333)||(30049777-30049892)
chr6 (214-328)||(11190357-11190469)
chr6 (212-339)||(29340914-29341040)
chr6 (334-393)||(18727112-18727171)
chr6 (250-311)||(26571045-26571104)
chr6 (337-387)||(29340838-29340888)
chr6 (337-413)||(3536041-3536118)
chr6 (337-413)||(30049923-30050000)
chr6 (218-289)||(2939848-2939918)
chr6 (337-387)||(30052210-30052260)
chr6 (337-413)||(3542252-3542329)
chr6 (306-384)||(33615538-33615614)
chr6 (278-383)||(12882075-12882177)
chr6 (304-387)||(1127231-1127312)
chr6 (295-367)||(27822170-27822239)
chr6 (337-386)||(11658939-11658988)
chr6 (218-312)||(19232188-19232279)
chr6 (245-328)||(2339167-2339248)
chr6 (218-311)||(3565600-3565691)
[»] chr5 (8 HSPs)
chr5 (212-324)||(40778909-40779020)
chr5 (212-311)||(21849106-21849204)
chr5 (250-367)||(19497356-19497467)
chr5 (222-325)||(19677252-19677353)
chr5 (337-413)||(21848970-21849047)
chr5 (304-408)||(26140320-26140422)
chr5 (337-387)||(40778818-40778868)
chr5 (337-385)||(18252423-18252472)
[»] chr2 (28 HSPs)
chr2 (212-328)||(33655482-33655598)
chr2 (232-328)||(27952437-27952532)
chr2 (232-328)||(27956273-27956368)
chr2 (212-332)||(31633960-31634079)
chr2 (212-385)||(2165779-2165949)
chr2 (212-311)||(2155823-2155921)
chr2 (218-332)||(31636197-31636312)
chr2 (213-311)||(22264292-22264389)
chr2 (304-387)||(23457623-23457704)
chr2 (212-387)||(15129274-15129447)
chr2 (212-328)||(22011288-22011406)
chr2 (249-332)||(8781407-8781488)
chr2 (304-387)||(21772352-21772432)
chr2 (337-413)||(27952323-27952400)
chr2 (337-413)||(31634111-31634188)
chr2 (304-387)||(33051595-33051676)
chr2 (337-387)||(33655635-33655685)
chr2 (337-387)||(36647300-36647350)
chr2 (337-413)||(2155974-2156051)
chr2 (337-413)||(22011443-22011520)
chr2 (337-413)||(31636344-31636421)
chr2 (295-385)||(12966445-12966532)
chr2 (337-393)||(28737913-28737969)
chr2 (304-385)||(32162002-32162081)
chr2 (337-413)||(27956159-27956236)
chr2 (278-364)||(4184881-4184963)
chr2 (218-293)||(18725747-18725820)
chr2 (337-392)||(23456582-23456638)
[»] chr7 (31 HSPs)
chr7 (212-311)||(4303305-4303404)
chr7 (212-328)||(13882805-13882918)
chr7 (212-311)||(4300412-4300511)
chr7 (212-311)||(13886323-13886420)
chr7 (304-387)||(24840120-24840201)
chr7 (212-339)||(859264-859389)
chr7 (212-339)||(1217268-1217393)
chr7 (304-379)||(3778748-3778820)
chr7 (218-311)||(5678346-5678438)
chr7 (218-311)||(5703398-5703490)
chr7 (212-265)||(1220613-1220666)
chr7 (304-385)||(1369782-1369861)
chr7 (304-385)||(27142643-27142722)
chr7 (337-400)||(1220459-1220522)
chr7 (306-383)||(4888721-4888795)
chr7 (306-393)||(11228960-11229045)
chr7 (337-413)||(13882691-13882768)
chr7 (337-413)||(13886164-13886241)
chr7 (307-387)||(11000857-11000935)
chr7 (337-387)||(27309646-27309697)
chr7 (337-387)||(859188-859238)
chr7 (337-387)||(1217192-1217242)
chr7 (337-386)||(1883496-1883546)
chr7 (337-388)||(1753628-1753680)
chr7 (278-387)||(1365624-1365729)
chr7 (337-387)||(5934611-5934662)
chr7 (337-386)||(1874545-1874595)
chr7 (337-387)||(30217822-30217871)
chr7 (307-393)||(1786663-1786747)
chr7 (337-393)||(4133299-4133356)
chr7 (304-385)||(8916410-8916489)
[»] chr4 (14 HSPs)
chr4 (219-328)||(6659449-6659556)
chr4 (210-351)||(24667541-24667678)
chr4 (250-325)||(13085214-13085286)
chr4 (223-328)||(22691178-22691281)
chr4 (278-387)||(40206101-40206206)
chr4 (269-311)||(13086270-13086312)
chr4 (304-385)||(38888023-38888102)
chr4 (215-311)||(4053007-4053101)
chr4 (304-384)||(10494880-10494958)
chr4 (214-298)||(2053156-2053238)
chr4 (337-387)||(6659362-6659412)
chr4 (304-368)||(9260550-9260611)
chr4 (304-387)||(18689552-18689633)
chr4 (304-385)||(7634057-7634136)
[»] scaffold0240 (2 HSPs)
scaffold0240 (304-385)||(1635-1713)
scaffold0240 (306-387)||(14826-14904)
[»] scaffold0330 (1 HSPs)
scaffold0330 (337-385)||(17647-17695)
[»] scaffold0054 (1 HSPs)
scaffold0054 (337-387)||(37718-37768)
[»] scaffold0251 (1 HSPs)
scaffold0251 (304-385)||(9679-9759)
[»] scaffold0024 (1 HSPs)
scaffold0024 (304-387)||(145711-145792)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 208 - 575
Target Start/End: Complemental strand, 45168530 - 45168159
Alignment:
Q  208 cagtccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||| ||||||||||||||||||||||||||||||    
T  45168530 cagtccacgagtttgttatttctttcactatataagcagaagttatgcagactaagaggcatatttttttattcaataaaattattcgagattttctctc 45168431  T
Q  308 aatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaacccttgc---- 403  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||        
T  45168430 aatttcttgtggattctggaaccctatatttttcacaagtttgtcgcttgcaaacttgtttatttcaatctaggtttagcacttgctaacccttgcttcc 45168331  T
Q  404 ttccgtactgtgacaatatccatattcaatactaaaatgtttagataaacattgttgttgattatgaacatcaaccttttgaaaaatagcataaacaaaa 503  Q
    ||||||||  |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45168330 ttccgtacaatgacaagatccatattcaatactaaaatgtttaaataaacattgttgttaattatgaacatcaaccttttgaaaaatagcataaacaaaa 45168231  T
Q  504 attgattactttaaaataggatcactaaaagaaaggtccttttgaattatacaacaacacctacaatatgag 575  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45168230 attgattactttaaaataggatcactaaaagaaaggtctttttgaattatacaacaacacctacaatctgag 45168159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 45168734 - 45168609
Alignment:
Q  5 gagagaaatgaatccacattttgagaaaggctcttttgggtccaatcaaaatgaaaaagaccccattttgatccccacaaagtgagaaaagcatgttctt 104  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45168734 gagagaaatgaatccacattttaagaaaggctgttttgggtccaatcaaaatgaaaaagaccccattttgatccccacaaaatgagaaaagcatgttctt 45168635  T
Q  105 a-ccctctagatatgatgtacgaggg 129  Q
    | |||||||||||||||||| |||||    
T  45168634 acccctctagatatgatgtaagaggg 45168609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 39913461 - 39913337
Alignment:
Q  213 cacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    |||| ||||||||||||||| | ||| ||| ||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| ||| |    
T  39913461 cacgggtttgttatttcttttagtatttaaacagaacttatgcagcctaagaggcaca-tttttgattcaataaaaatattcgagacttttctcccaa-t 39913364  T
Q  312 tctggtgaattccggaaccctatattt 338  Q
    ||||||| |||||||| |||| |||||    
T  39913363 tctggtggattccggacccctctattt 39913337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 2472800 - 2472720
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  2472800 tctcaatttctggtggattccggaaccctat---tttcacaagtttgtcggttgcaaacttgtctctttcaatttaggtttagc 2472720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 41218665 - 41218774
Alignment:
Q  217 agtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctg 315  Q
    |||||||||||||||| | ||| ||||||||| ||||| ||||||||||||||||||||  ||||||||| | ||||||||| ||||||||||| |||||    
T  41218665 agtttgttatttcttttagtatttaagcagaacttatggagcctaagagacacactttt--attcaataataatattcgagacttttctctcaa-ttctg 41218761  T
Q  316 gtgaattccggaa 328  Q
    ||| |||||||||    
T  41218762 gtggattccggaa 41218774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 5128814 - 5128879
Alignment:
Q  262 agagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccggaa 328  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5128814 agaggcacactttttgattcaataaaattattcgagattttctctcaa-ttctggtggattccggaa 5128879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 53012882 - 53012996
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||| |||||||||||||||||||||||||||| || | ||| |||||||||| |||||||||  ||||| ||| | ||||||||| |||||||||||     
T  53012882 ccacgggtttgttatttctttcactatataagcataactaatgtagcctaagaggcacactttt--attcattaataatattcgagacttttctctcaa- 53012978  T
Q  311 ttctggtgaattccggaa 328  Q
    |||||||| |||||||||    
T  53012979 ttctggtggattccggaa 53012996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 3069107 - 3068994
Alignment:
Q  213 cacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||  |||||||||  ||||| ||| | ||||||| | |||||||||||||    
T  3069107 cacgagtttgttatttctttcactatataagcataacttatgtagcctaagatgcacactttt--attcattaataatattcgatacttttctctcaatt 3069010  T
Q  312 tctggtgaattccggaa 328  Q
    | ||||| |||||||||    
T  3069009 t-tggtggattccggaa 3068994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 43304191 - 43304079
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    ||| ||||| ||| | ||||||||| |||||||||||     
T  43304191 ccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagagacac----ttttattcattaataatattcgagacttttctctcaa- 43304097  T
Q  311 ttctggtgaattccggaa 328  Q
    |||||||| ||| |||||    
T  43304096 ttctggtggatttcggaa 43304079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 43306898 - 43306791
Alignment:
Q  219 tttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctggt 317  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||  ||||| ||| | ||||| ||| ||||||||||| |||||||    
T  43306898 tttgttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt--attcattaataatattcaagacttttctctcaa-ttctggt 43306802  T
Q  318 gaattccggaa 328  Q
    | ||| |||||    
T  43306801 ggattacggaa 43306791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 3063970 - 3063872
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||| |||||||||||||||||||||||||||| || ||||| ||||||||||  ||||||||  ||||| ||| | ||||||||| ||||||||||||    
T  3063970 ccacgggtttgttatttctttcactatataagcataacttatgtagcctaagaggtacactttt--attcattaataatattcgagacttttctctcaat 3063873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 25857653 - 25857746
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    ||||||||||||||| | ||| |||||| || ||||| ||||||||||||||||||||| ||||||||| | |||| |||| |||||||||||||    
T  25857653 gtttgttatttcttttagtatttaagcataacttatgtagcctaagagacacacttttt-attcaataataatatttgagacttttctctcaatt 25857746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 19795115 - 19795208
Alignment:
Q  218 gtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaattt 312  Q
    |||||||||||||||  |||| ||| |||||  |||||||||||||||||||   ||||| ||||||||||||||||| ||||||||||| |||||    
T  19795115 gtttgttatttcttttgctatttaaacagaacattatgcagcctaagagacaa--ttttttattcaataaaattattccagattttctctaaattt 19795208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 5128916 - 5128966
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  5128916 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 5128966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 43304042 - 43303992
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  43304042 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 43303992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 43306754 - 43306677
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||| | |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  43306754 ttttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 43306677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 19949861 - 19949957
Alignment:
Q  214 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    ||||| ||||||||||||| | ||| ||| ||||| ||||||||||||||||   |||||| | ||| ||||||| |||| |||| |||||||||||||    
T  19949861 acgaggttgttatttcttttagtatttaaacagaacttatgcagcctaagag--tcactttatcattgaataaaaatattagagacttttctctcaatt 19949957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 19999317 - 19999262
Alignment:
Q  214 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacac 269  Q
    ||||||||||||||||||| | ||| ||| ||||| ||||||||||||| ||||||    
T  19999317 acgagtttgttatttcttttagtatttaaacagaacttatgcagcctaaaagacac 19999262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 40593605 - 40593564
Alignment:
Q  283 ataaaattattcgagattttctctcaatttctggtgaattccg 325  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  40593605 ataaaattattcgagattttctctcaattt-tggtggattccg 40593564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 22922084 - 22921969
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  22922084 ccacgggtttgttatttctttcactatatatgcagaacttatgcagcctaagagacacaccttttgattcaataaaattattcgagattttctctcaa-t 22921986  T
Q  312 tctggtgaattccggaa 328  Q
    ||||||| |||||||||    
T  22921985 tctggtggattccggaa 22921969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 332
Target Start/End: Original strand, 6845195 - 6845311
Alignment:
Q  214 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttc 313  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||||||||||| ||| | |||||||||||||||||||||||     
T  6845195 acgagtttgttatttctttcactatataagcagaacttatgtatcctaagag--acactttttgattcattaataatattcgagattttctctcaatttt 6845292  T
Q  314 tggtgaattccggaaccct 332  Q
    ||||| |||||| ||||||    
T  6845293 tggtggattccgaaaccct 6845311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 42890253 - 42890347
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctct 306  Q
    ||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42890253 ccacgggtttgttatttctttcactacataagcaaaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctct 42890347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 212 - 324
Target Start/End: Complemental strand, 22926880 - 22926771
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||| |    
T  22926880 ccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagagacaca--atttaattcaataaaaatattcgagattttctctcaa-t 22926784  T
Q  312 tctggtgaattcc 324  Q
    ||||||| |||||    
T  22926783 tctggtggattcc 22926771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 42891878 - 42891783
Alignment:
Q  232 tcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccggaa 328  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  42891878 tcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattatttgagattttctctcaa-ttctggtggattccggaa 42891783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 22512275 - 22512165
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttg-attcaataaaattattcgagattttctctcaatttctgg 316  Q
    |||| |||||||||||||||||||||||| | ||||| | |||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  22512275 gtttattatttctttcactatataagcagcacttatgtaacctaagagtcacactttttttattcaataaaattattcgagattttctctcaa-ttctgg 22512177  T
Q  317 tgaattccggaa 328  Q
    || ||| |||||    
T  22512176 tggatttcggaa 22512165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 18468611 - 18468732
Alignment:
Q  290 tattcgaga-ttttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagca 388  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||   |||||||||||||||| |||||| ||||||  |||| | |||||||||||     
T  18468611 tattcgagacttttctctcaatttctggtggattccggaaccctat---tttcacaagtttgtcgcttgcaagcttgttcttttctacctaggtttagcg 18468707  T
Q  389 tttgcgaacccttgcttccgtactg 413  Q
     |||| |||||||||||| ||||||    
T  18468708 cttgctaacccttgcttctgtactg 18468732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 215 - 332
Target Start/End: Original strand, 37189725 - 37189841
Alignment:
Q  215 cgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttct 314  Q
    ||||||||||||||||||| |||||||| |||||  |||| |||| |||||  ||||||||| ||||| ||| | ||||||||||||| |||||||||||    
T  37189725 cgagtttgttatttctttcgctatataaacagaacatatgtagcccaagaggtacacttttttattcattaataatattcgagatttt-tctcaatttct 37189823  T
Q  315 ggtgaattccggaaccct 332  Q
    |||| ||| |||||||||    
T  37189824 ggtggatttcggaaccct 37189841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 18180910 - 18180802
Alignment:
Q  218 gtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctgg 316  Q
    |||||||||||||||   ||| ||| |||||  ||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  18180910 gtttgttatttcttttgttatttaaacagaacattatgtagcctaagaggcac--tttttgattcaataaaattattcgagattttctctcaa-ttctgg 18180814  T
Q  317 tgaattccggaa 328  Q
    || |||| ||||    
T  18180813 tggattctggaa 18180802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 23573445 - 23573538
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaattt 312  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||| |||||||||  ||||| ||| | ||||||||| ||||||||||||||    
T  23573445 gtttgttatttctttcgctatataagcggaacttatgtagcctaagaggcacactttt--attcattaataatattcgagacttttctctcaattt 23573538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 20693776 - 20693855
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggttta 385  Q
    |||||||||||| || ||||||||||| |||   |||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  20693776 tctcaatttctgatggattccggaaccatat---tttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggttta 20693855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 22520967 - 22520918
Alignment:
Q  278 attcaataaaattattcgagattttctctcaatttctggtgaattccggaa 328  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  22520967 attcaataaaattattcgagattttctctcaa-ttctggtggattccggaa 22520918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 23570591 - 23570654
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 400  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||    
T  23570591 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccct 23570654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 2189803 - 2189753
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||||||||    
T  2189803 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagc 2189753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 2687719 - 2687800
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagc 387  Q
    ||||||||||| ||| ||||  |||||||||   |||||||||||||||| ||||||||||||| | |||| |||||||||||||    
T  2687719 tctcaatttcttgtggattctagaaccctat---tttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttagc 2687800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 22926730 - 22926680
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  22926730 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 22926680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 23570449 - 23570554
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctgg 316  Q
    ||||||||||||||||||||||||||| ||| ||||   ||||||||| |||||||||  |||||  || | ||||||||| ||||||||||| ||||||    
T  23570449 gtttgttatttctttcactatataagcggaacttat---gcctaagaggcacactttt--attcataaataatattcgagacttttctctcaa-ttctgg 23570542  T
Q  317 tgaattccggaa 328  Q
    || |||| ||||    
T  23570543 tgcattctggaa 23570554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 24731204 - 24731285
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagc 387  Q
    |||||||||||| ||||||||| ||| ||||   |||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  24731204 tctcaatttctgatgaattccgaaactctat---tttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagc 24731285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 42890399 - 42890449
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  42890399 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 42890449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 42891746 - 42891696
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  42891746 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 42891696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 16598256 - 16598329
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttc-aatctaggtttagcatttgcgaacccttgcttccgt 409  Q
    |||||||||||||||||  ||||||||||||| |||| |||||| |||||||  |||| |||| ||||||||||    
T  16598256 ttttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgctaaccattgcttccgt 16598329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 22921932 - 22921855
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| |||||||||| ||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  22921932 ttttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 22921855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 2609605 - 2609546
Alignment:
Q  306 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt 368  Q
    |||||||||||||||||| | ||||||||   |||||||||||||||  ||||||||||||||    
T  2609605 tcaatttctggtgaattctgtaaccctat---tttcacaagtttgtcacttgcaaacttgttt 2609546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 22512128 - 22512065
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 400  Q
    ||||||||||||||||| |||||||||||||  |||| | |||||||||||  |||| ||||||    
T  22512128 ttttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccct 22512065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 22519428 - 22519365
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 400  Q
    ||||||||||||||||| |||||||||||||  |||| | |||||||||||  |||| ||||||    
T  22519428 ttttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccct 22519365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 6845343 - 6845420
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||| ||| ||| |||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  6845343 ttttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 6845420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 14130142 - 14130201
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgt 366  Q
    ||||||||||||||| ||||||||||| ||   ||||||||| ||| ||| ||||||||||||    
T  14130142 tctcaatttctggtggattccggaacctta---ttttcacaaatttatcgcttgcaaacttgt 14130201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 26150601 - 26150660
Alignment:
Q  269 cactttttgattcaataaaattattcgaga-ttttctctcaatttctggtgaattccggaa 328  Q
    |||||||| ||||||||||| ||||||||| ||||||||||| |||||||| |||| ||||    
T  26150601 cactttttcattcaataaaaatattcgagacttttctctcaa-ttctggtggattctggaa 26150660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 50857678 - 50857563
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |    
T  50857678 ccacgggtttgttattactttcactatataagcagaacttatgcagcctaagaggcacactttttgatacaataaaattattcgagattttctctcaa-t 50857580  T
Q  312 tctggtgaattccggaa 328  Q
    ||||||| |||||||||    
T  50857579 tctggtggattccggaa 50857563  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 8931080 - 8931195
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||| || || ||| | ||||||||||||||||||||||    
T  8931080 ccacgagtttgttatttctttcactatataagcagaa-ttatgcagcc---gagacacacttttttat-cattaataatattcgagattttctctcaatt 8931174  T
Q  312 tctggtgaattccggaaccct 332  Q
    ||||||| |||||||||||||    
T  8931175 tctggtggattccggaaccct 8931195  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 31915518 - 31915606
Alignment:
Q  295 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttag 386  Q
    |||| ||| ||||||||||||||| |||||||||||||||   |||||||||||||||| |||||||||||||| |||||| ||| ||||||    
T  31915518 gagagtttttctcaatttctggtggattccggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttctttcaacctaagtttag 31915606  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 10927171 - 10927256
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagcatttgc 393  Q
    ||||||||||||||| |||||||||||||     |||||||||||||||| ||||||||||||| | ||||| |||||||||||| |||||    
T  10927171 tctcaatttctggtggattccggaaccct-----tttcacaagtttgtcgcttgcaaacttgttctttttcagtctaggtttagcgtttgc 10927256  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 8931227 - 8931304
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||  |||| ||||||  ||||||||||||    
T  8931227 ttttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgctaaccctacgcttccgtactg 8931304  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 13441826 - 13441718
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctgg 316  Q
    ||||||||||||||||||||||||||| ||| ||||  |||||||||| |||||||||  ||||| ||| | |||| |||| ||||||||||| |||||     
T  13441826 gtttgttatttctttcactatataagctgaacttatatagcctaagaggcacactttt--attcattaataatattagagacttttctctcaa-ttctga 13441730  T
Q  317 tgaattccggaa 328  Q
    || |||||||||    
T  13441729 tggattccggaa 13441718  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 12944093 - 12944174
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    ||||||||||||||| ||||| ||||||||| |||   |||||||||||| ||||||||||||||  ||||||||||| ||||||    
T  12944093 tctcaatttctggtggattccagaaccctattttt---acaagtttgtcgtttgcaaacttgtttcttttcaatctagatttagc 12944174  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 28660852 - 28660771
Alignment:
Q  310 tttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatt-tcaatctaggtttagcatttgc 393  Q
    ||||||||| ||| |||||||||||   |||||||||||||||| |||||||||||||| || || ||||||||||||| |||||    
T  28660852 tttctggtggatttcggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgc 28660771  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 23987549 - 23987630
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatat-ttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtt 383  Q
    ||||||||||||||| ||||||||||| | ||| ||||||||||||||||| ||||||| ||||| | |||| |||||||||    
T  23987549 tctcaatttctggtggattccggaaccttctatattttcacaagtttgtcgtttgcaaagttgttctttttctatctaggtt 23987630  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 31913359 - 31913434
Alignment:
Q  309 atttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    |||||||||| ||| ||||| ||||| |||   |||||||||||| |||||||||||||| |||||| |||||||||||    
T  31913359 atttctggtggatttcggaaacctattttt---acaagtttgtcgcttgcaaacttgtttctttcaacctaggtttagc 31913434  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 8221465 - 8221547
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttat-ttcaatctaggtttagca 388  Q
    ||||||||||||||| ||||| ||||||||   |||||| |||||||||| |||||||||||| | | |||||||| |||||||||    
T  8221465 tctcaatttctggtggattccagaacccta---ttttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagca 8221547  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 26981490 - 26981568
Alignment:
Q  308 aatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    |||||||| || ||| || |||| ||||||||| |||||||| ||| |||||||||||||| ||||||||||| ||||||    
T  26981490 aatttctgatggatttcgaaaccatatattttt-acaagtttttcgcttgcaaacttgtttctttcaatctagatttagc 26981568  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 12486392 - 12486347
Alignment:
Q  279 ttcaataaaattattcgagattttctctcaatttctggtgaattccg 325  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12486392 ttcaataaaattattcgagattttctctcaattt-tggtggattccg 12486347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 50713690 - 50713771
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgt-ttatttcaatctaggtttagc 387  Q
    ||||||||||||||| |||||| |||||||   |||||||||||||||||  ||| ||||||| |  ||||||||||||||||||    
T  50713690 tctcaatttctggtggattccgaaacccta---ttttcacaagtttgtcgcctgcgaacttgtctcttttcaatctaggtttagc 50713771  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 13444070 - 13444021
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttag 386  Q
    ||||||||||||||||| |||||||||||||  |||| ||||||||||||    
T  13444070 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttag 13444021  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 13444203 - 13444107
Alignment:
Q  230 tttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctggtgaattccggaa 328  Q
    ||||||||||||||||||| ||||| |||||||||| ||||  |||| ||||| ||| | |||| |||| ||||||||||| |||||||| ||| |||||    
T  13444203 tttcactatataagcagaacttatgtagcctaagaggcaca--tttttattcagtaataatattagagacttttctctcaa-ttctggtggattacggaa 13444107  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 42071489 - 42071456
Alignment:
Q  278 attcaataaaattattcgagattttctctcaatt 311  Q
    ||||||||||||||||||||||| ||||||||||    
T  42071489 attcaataaaattattcgagattctctctcaatt 42071456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 43681468 - 43681520
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttg--tttatttcaatctaggtttagc 387  Q
    ||||||||| ||||||| |||||||||||  ||| ||||||||||||||||||    
T  43681468 ttttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagc 43681520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 50857526 - 50857449
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| || ||||||| ||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  50857526 ttttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 50857449  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 9195020 - 9194976
Alignment:
Q  341 cacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 385  Q
    |||| |||||||| ||||||||||||||  |||||||||||||||    
T  9195020 cacatgtttgtcgcttgcaaacttgtttcattcaatctaggttta 9194976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 218 - 387
Target Start/End: Complemental strand, 46932 - 46765
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggt 317  Q
    |||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||| ||| | ||||||||||||||||||||||| ||||    
T  46932 gtttgttatttctttcactatataagcaaaacttatccagcttaagagacacacttttttattcattaataatattcgagattttctctcaatttttggt 46833  T
Q  318 gaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    | ||||||||||| ||   |||| | | |||||||| |||||||||||||  |||| |||||||||||||    
T  46832 ggattccggaaccttaa--ttttgataggtttgtcgcttgcaaacttgttcttttctatctaggtttagc 46765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 45490 - 45376
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggt 317  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||| || || |||| ||||| ||| | ||||||||||||||||||||||||||||    
T  45490 gtttattatttctttcactatataaggagaacttatgcagcctaagaggcaaacatttttattcattaataatattcgagattttctctcaatttctggt 45391  T
Q  318 gaattccggaaccct 332  Q
    | |||| ||||||||    
T  45390 ggattctggaaccct 45376  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 3535891 - 3536009
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||| ||| | ||||||||||||||||||||||    
T  3535891 ccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagaggcacactttt--attcattaataatattcgagattttctctcaatt 3535988  T
Q  312 tctggtgaattccggaaccct 332  Q
    ||||||| |||||||||||||    
T  3535989 tctggtggattccggaaccct 3536009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 3542102 - 3542220
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||| ||| | ||||||||||||||||||||||    
T  3542102 ccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagaggcacactttt--attcattaataatattcgagattttctctcaatt 3542199  T
Q  312 tctggtgaattccggaaccct 332  Q
    ||||||| |||||||||||||    
T  3542200 tctggtggattccggaaccct 3542220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 30052064 - 30052179
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggt 317  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||||||||||| ||||    
T  30052064 gtttgttatttctttcactatataagcaaaacttatgcagcttaagagacacacttttttattcattaataatattcgagattttctctcaatttttggt 30052163  T
Q  318 gaattccggaacccta 333  Q
    | ||||||||||||||    
T  30052164 ggattccggaacccta 30052179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 30049777 - 30049892
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggt 317  Q
    |||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||| ||| | ||||||||||||||||||||||| ||||    
T  30049777 gtttgttatttctttcactatataagcaaaacttattcagcttaagagacacacttttttattcattaataatattcgagattttctctcaatttttggt 30049876  T
Q  318 gaattccggaacccta 333  Q
    | ||||||||||||||    
T  30049877 ggattccggaacccta 30049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 11190357 - 11190469
Alignment:
Q  214 acgagtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaattt 312  Q
    |||||||||||||||||||  |||| ||| |||||  ||||| ||| ||| ||||||  |||||||||||||||||||||||||||||||||||||| ||    
T  11190357 acgagtttgttatttcttttgctatttaaacagaacattatgtagcttaaaagacac--tttttgattcaataaaattattcgagattttctctcaa-tt 11190453  T
Q  313 ctggtgaattccggaa 328  Q
    |||||| |||||||||    
T  11190454 ctggtggattccggaa 11190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 29341040 - 29340914
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||| ||||||||||||  ||||||||||||||||| ||||||||||||||| | ||||||||| ||||| ||| | ||||||||| |||||||||||     
T  29341040 ccacgggtttgttatttcaatcactatataagcagaacttatgcagcctaagacaaacacttttt-attcattaataatattcgagacttttctctcaa- 29340943  T
Q  311 ttctggtgaattccggaaccctatatttt 339  Q
    |||| ||| ||||||||| ||| ||||||    
T  29340942 ttctagtggattccggaaacctttatttt 29340914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 18727112 - 18727171
Alignment:
Q  334 tatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgc 393  Q
    |||||||||||||||||||| |||| ||||||| | |||||||||||||||||| |||||    
T  18727112 tatttttcacaagtttgtcgcttgcgaacttgtgtttttcaatctaggtttagcgtttgc 18727171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 26571045 - 26571104
Alignment:
Q  250 ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    |||||||||||||||| |||  || || ||||||||||||||||||||||||||||||||||    
T  26571045 ttatgcagcctaagagccac--ttattcattcaataaaattattcgagattttctctcaatt 26571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 29340888 - 29340838
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  29340888 ttttcacaagtttgtcgcttgcaaacttgtttttttctatctaggtttagc 29340838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 3536041 - 3536118
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  3536041 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 3536118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 30049923 - 30050000
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccctt-gcttccgtactg 413  Q
    ||||||||||||||||| |||||||||||||  |||| || ||||||||||  |||| ||||||| ||||||||||||    
T  30049923 ttttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgctaacccttcgcttccgtactg 30050000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 2939918 - 2939848
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaat 289  Q
    |||| |||||||||| | ||| ||||||||| ||||||||||||||||  ||||||||| ||||||||||||    
T  2939918 gtttattatttcttttagtatttaagcagaacttatgcagcctaagag-gacactttttcattcaataaaat 2939848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 30052210 - 30052260
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  30052210 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 30052260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 3542252 - 3542329
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| || ||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  3542252 ttttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 3542329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 33615614 - 33615538
Alignment:
Q  306 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggttt 384  Q
    ||||||| |||||||||| | ||||||||   |||||||||||||||| ||||||||||||| | |||| ||||||||||    
T  33615614 tcaatttatggtgaattctgaaaccctat---tttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 383
Target Start/End: Original strand, 12882075 - 12882177
Alignment:
Q  278 attcaataaaattattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatt-tcaat 376  Q
    ||||||||| ||| || |||| ||| ||||||||||||||| |||||| |||||||   ||||||||||||||||| ||  |||||||| | || |||||    
T  12882075 attcaataatatt-ttagagagtttttctcaatttctggtggattccgaaacccta---ttttcacaagtttgtcgctttaaaacttgtctcttctcaat 12882170  T
Q  377 ctaggtt 383  Q
    |||||||    
T  12882171 ctaggtt 12882177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 1127231 - 1127312
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    ||||||||| ||||| |||||| ||| ||||   |||||||| ||||||| ||||||||||||||  ||| ||||||||||||||    
T  1127231 tctcaatttttggtgtattccgaaacactat---tttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggtttagc 1127312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 27822239 - 27822170
Alignment:
Q  295 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt 367  Q
    |||| ||| ||||||||||||||| ||| ||||||||| |   |||||||||||||||| ||| |||||||||    
T  27822239 gagagtttttctcaatttctggtggatttcggaaccctgt---tttcacaagtttgtcgcttgaaaacttgtt 27822170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 11658939 - 11658988
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttag 386  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||||||||    
T  11658939 ttttcacaagtttatcgcttgcaaatttgttcttttcaatctaggtttag 11658988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 19232188 - 19232279
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaattt 312  Q
    |||||| |||||||| | ||| |||| |||| |||||||||||| ||||||||||||   ||||||||| | ||||||||| |||| |||||||||    
T  19232188 gtttgtaatttcttttagtatttaag-agaacttatgcagcctacgagacacacttt---attcaataacaatattcgagacttttatctcaattt 19232279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 2339248 - 2339167
Alignment:
Q  245 agaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctggtgaattccggaa 328  Q
    |||| |||||||||||||||| ||  |||||| |||||||||||||| |||||| ||||||||||| |||||||| ||| |||||    
T  2339248 agaacttatgcagcctaagaggcat-ctttttcattcaataaaatta-tcgagacttttctctcaa-ttctggtggatttcggaa 2339167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 3565600 - 3565691
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    |||||||||||| || | ||| ||| ||||| ||||| |||| ||||| |||   |||| ||||||||||| ||||||||| |||||||||||||    
T  3565600 gtttgttatttcatttagtatttaaacagaacttatgtagccaaagaggcac---ttttcattcaataaaaatattcgagacttttctctcaatt 3565691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 324
Target Start/End: Complemental strand, 40779020 - 40778909
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| |||| |||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  40779020 ccacgtgtttattatttctttcactatataagcagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagattttctctcaa-t 40778922  T
Q  312 tctggtgaattcc 324  Q
    ||||||| |||||    
T  40778921 tctggtggattcc 40778909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 21849204 - 21849106
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| |||||||||||||||||||||||||||  || ||||| ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  21849204 ccacgggtttgttatttctttcactatataagcgaaacttatgtagcctaa-aggtacactttttgattcaataaaattattcgagattttctctcaatt 21849106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 367
Target Start/End: Complemental strand, 19497467 - 19497356
Alignment:
Q  250 ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagttt 349  Q
    |||||||||||||||| |||  ||||||||||||||| ||| || |||||||| ||||||||| || || ||| |||||||||||   ||||||||||||    
T  19497467 ttatgcagcctaagaggcac--tttttgattcaataatatt-ttagagattttttctcaatttttgatggatttcggaaccctat---tttcacaagttt 19497374  T
Q  350 gtcggttgcaaacttgtt 367  Q
    |||| |||||||||||||    
T  19497373 gtcgcttgcaaacttgtt 19497356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 19677353 - 19677252
Alignment:
Q  222 gttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctggtgaa 320  Q
    ||||||||||| | ||| ||| ||||| ||||||| |||||||| |||||||| | ||||||||||| ||||||||| ||||||||||| |||||||| |    
T  19677353 gttatttcttttagtatttaaacagaacttatgcatcctaagaggcacactttgt-attcaataaaa-tattcgagacttttctctcaa-ttctggtgga 19677257  T
Q  321 ttccg 325  Q
    |||||    
T  19677256 ttccg 19677252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 21849047 - 21848970
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||| ||  |||| ||||||  ||||||||||||    
T  21849047 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttggcgcttgctaaccctacgcttccgtactg 21848970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 26140320 - 26140422
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggtttagcatttgcgaacccttg 402  Q
    ||||||||| ||||| ||||  |||||||||   ||||| |||||||||| |||||| |||||||  ||||||||||| |||||| ||||| ||||  ||    
T  26140320 tctcaatttttggtggattcttgaaccctat---tttcataagtttgtcgcttgcaatcttgttttctttcaatctagatttagcgtttgctaacctatg 26140416  T
Q  403 cttccg 408  Q
    ||||||    
T  26140417 cttccg 26140422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 40778868 - 40778818
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    |||| |||||||||||| |||||||||||||  |||| |||||||||||||    
T  40778868 tttttacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 40778818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 18252423 - 18252472
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggttta 385  Q
    |||||||| |||||||| ||||||||||||| |||||| |||||||||||    
T  18252423 ttttcacaggtttgtcgcttgcaaacttgttctatttctatctaggttta 18252472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 33655482 - 33655598
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| |||||||||||||||||||||||||| ||||   ||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  33655482 ccacgggtttgttatttctttcactatataaggagaaccaatttagcctaagaggcacactttttcattcaataaaattattcgagattttctctcaatt 33655581  T
Q  312 tctggtgaattccggaa 328  Q
    ||||||| |||||||||    
T  33655582 tctggtggattccggaa 33655598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 27952532 - 27952437
Alignment:
Q  232 tcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccggaa 328  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  27952532 tcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaa-ttctggtggattccggaa 27952437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 27956368 - 27956273
Alignment:
Q  232 tcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccggaa 328  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  27956368 tcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaa-ttctggtggattccggaa 27956273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 31633960 - 31634079
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| ||||| || ||||||| ||||| ||| | |||| |||||||||||||||||    
T  31633960 ccacgagtttgttatttctttcactatataagtagaacttatgcagccgaagaggca-acttttttattcattaataatatttgagattttctctcaatt 31634058  T
Q  312 tctggtgaattccggaaccct 332  Q
    ||||||| |||||| ||||||    
T  31634059 tctggtggattccgaaaccct 31634079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 212 - 385
Target Start/End: Original strand, 2165779 - 2165949
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||| ||||| ||| | ||||||||| ||||||||||||    
T  2165779 ccacgagtttgttatttctttcactatataaggagaacttatgcagcctaagagacaca--tttttattcattaataatattcgagacttttctctcaat 2165876  T
Q  311 ttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 385  Q
    || ||||| |||| | || | | || |||| | |||||||| | |||||||||||||  |||| |||||||||||    
T  2165877 tt-tggtggattctgaaaacattta-ttttgataagtttgttgcttgcaaacttgttcttttctatctaggttta 2165949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 2155823 - 2155921
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| | ||||| ||| ||||||||||||    
T  2155823 ccacgtgtttgttatttctttcactatataagcagaacttatgcagcctaagagacacactttt--attcaataataatattcaagacttttctctcaat 2155920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 31636197 - 31636312
Alignment:
Q  218 gtttgttatttctttcactatata--agcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctg 315  Q
    ||||||||||||||||||||||||  || |||| ||||| |||| |||||||| ||||||| ||||| ||| | ||||| ||||||||||||||||||||    
T  31636197 gtttgttatttctttcactatatataagtagaacttatgtagccgaagagaca-acttttttattcattaataatattcaagattttctctcaatttctg 31636295  T
Q  316 gtgaattccggaaccct 332  Q
    ||| |||||||||||||    
T  31636296 gtggattccggaaccct 31636312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 22264292 - 22264389
Alignment:
Q  213 cacgagtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    |||| |||||||||||||||| |||| |||||| ||  |||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||    
T  22264292 cacgggtttgttatttctttcgctatttaagcataacattatgcagcctaagaggcac--tttttgattcaataaaattattcgagattttatctcaatt 22264389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 23457623 - 23457704
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggtttagc 387  Q
    ||||||||| ||||| |||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  23457623 tctcaatttttggtggattccggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggtttagc 23457704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 387
Target Start/End: Original strand, 15129274 - 15129447
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacacttt--ttgattcaataaaattattcgaga-ttttctctca 308  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||  ||   || |||| ||| |  |||| |||||||| |    
T  15129274 ccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagaggcacacttttatttcatctataatatt-tcagagacttttctct-a 15129371  T
Q  309 atttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
     ||||||||  |||| |||||||||   ||||||||||||||||| |||| ||||||||  |||| |||||||||||||    
T  15129372 ttttctggttgattctggaacccta---ttttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttagc 15129447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 22011288 - 22011406
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacacttt--ttgattcaataaaattattcgaga-ttttctctca 308  Q
    ||||| || ||||||||||||||||||||||||| || ||||| ||||||||||||  |||||  || ||||| ||| | ||||||||| ||||||||||    
T  22011288 ccacgggtctgttatttctttcactatataagcaaaacttatgtagcctaagagaccgacttttatttattcattaataatattcgagacttttctctca 22011387  T
Q  309 atttctggtgaattccggaa 328  Q
    | |||||||| |||||||||    
T  22011388 a-ttctggtggattccggaa 22011406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 8781407 - 8781488
Alignment:
Q  249 gttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccggaaccct 332  Q
    ||||||||||||||||| |||  ||||| |||||||||||||||||||||||| ||||||| |||||||| ||| || ||||||    
T  8781407 gttatgcagcctaagaggcact-tttttcattcaataaaattattcgagatttactctcaa-ttctggtggatttcgaaaccct 8781488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 21772352 - 21772432
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||| || || |||| ||||||||||   ||||| |||||||||| |||||||||||||| |||||||||| |||||||    
T  21772352 tctcaatttgtgatggattcaggaaccctat---tttcataagtttgtcgcttgcaaacttgtttttttcaatctaagtttagc 21772432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 27952400 - 27952323
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  27952400 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 27952323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 31634111 - 31634188
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| | |||||||||||  |||| ||||||||||||| ||||| ||||||  ||||||||||||    
T  31634111 ttttcacaagtttgtcgctagcaaacttgttcttttctatctaggtttagcgtttgctaaccctacgcttccgtactg 31634188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 33051595 - 33051676
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagc 387  Q
    ||||||||||| ||| ||||| |||||||||   ||||| |||||||||| ||||||||||||| | ||||||| ||||||||||    
T  33051595 tctcaatttctagtggattccagaaccctat---tttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagc 33051676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 33655635 - 33655685
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||| | |||| |||||||||||||    
T  33655635 ttttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagc 33655685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 36647300 - 36647350
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||||||||    
T  36647300 ttttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagc 36647350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 2155974 - 2156051
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| | |||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  2155974 ttttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 2156051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 22011443 - 22011520
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||  |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  22011443 ttttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 22011520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 31636344 - 31636421
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| ||||||||| |||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  31636344 ttttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 31636421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 12966445 - 12966532
Alignment:
Q  295 gagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 385  Q
    |||| ||| ||||||||| ||||| ||| |||||||||||   ||||||||||| |||| |||| ||||||||  ||||||||||| ||||    
T  12966445 gagagtttttctcaatttttggtggatttcggaaccctat---tttcacaagttcgtcgcttgcgaacttgttcttttcaatctagattta 12966532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 28737913 - 28737969
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgc 393  Q
    |||||| |||||||||| ||||||||||| |  ||||||||||||||||||| ||||    
T  28737913 ttttcaaaagtttgtcgcttgcaaacttgctcttttcaatctaggtttagcacttgc 28737969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 32162081 - 32162002
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttta 385  Q
    ||||| ||||||||| ||||| |||||||||   |||||||||||||||  ||||||||||||||  |||| |||||||||||    
T  32162081 tctcagtttctggtggattcctgaaccctat---tttcacaagtttgtcacttgcaaacttgtttcttttcgatctaggttta 32162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 27956236 - 27956159
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    |||||| | |||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  27956236 ttttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 27956159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 4184881 - 4184963
Alignment:
Q  278 attcaataaaattattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaactt 364  Q
    ||||||||| ||| || |||| ||| ||||||||||| ||| |||||| |||||||   ||||||||||||||||| |||| |||||    
T  4184881 attcaataatatt-ttagagagtttttctcaatttctcgtggattccgaaacccta---ttttcacaagtttgtcgcttgcgaactt 4184963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 18725820 - 18725747
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattatt 293  Q
    ||||||||||||||| | ||| ||| || || |||||| | |||||||||||  ||||| ||||||||||||||||    
T  18725820 gtttgttatttcttttagtatttaaacaaaacttatgcggtctaagagacac--tttttcattcaataaaattatt 18725747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 23456582 - 23456638
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagcatttg 392  Q
    |||||| |||||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  23456582 ttttcaaaagtttgtcgcttgcaaacttgtttcttttcaatataggtttaacatttg 23456638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 4303305 - 4303404
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4303305 ccacgggtttgttatttctttcactatataaacaggacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaatt 4303404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 13882918 - 13882805
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||  |||||||||||||||||||||||||| ||||||||||||||| |    
T  13882918 ccacgggtttgttatttctttcactatataagcagaacttatgtatcctaagag--acactttttgattcaataaaattatttgagattttctctcaa-t 13882822  T
Q  312 tctggtgaattccggaa 328  Q
    ||||||| |||||||||    
T  13882821 tctggtggattccggaa 13882805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 4300412 - 4300511
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||  |||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  4300412 ccacgggtttgttatttctttcggtatataaggagaacttatgtagcctaagagacacactttttgattcaatcaaattatttgagattttctctcaatt 4300511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 13886420 - 13886323
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||| | ||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  13886420 ccacgggtttgttatttctttcactatataagctgaacttatgtatcctaagagacac--tttttgattcaataaaatcattcgagattttctctcaatt 13886323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 24840120 - 24840201
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    ||||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  24840120 tctcaatttctggtggattccggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 24840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 859389 - 859264
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||||||||||||||||||||||||||||| || || ||||| ||||||| |  |||||||||  ||||| ||| | |||| |||| |||||||||||     
T  859389 ccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacactttt--attcattaataatatttgagacttttctctcaa- 859293  T
Q  311 ttctggtgaattccggaaccctatatttt 339  Q
    |||||||| ||||||||| ||| ||||||    
T  859292 ttctggtggattccggaaacctttatttt 859264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 1217393 - 1217268
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaat 310  Q
    ||||||||||||||||||||||||||||||| || || ||||| ||||||| |  |||||||||  ||||| ||| | |||| |||| |||||||||||     
T  1217393 ccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacactttt--attcattaataatatttgagacttttctctcaa- 1217297  T
Q  311 ttctggtgaattccggaaccctatatttt 339  Q
    |||||||| ||||||||| ||| ||||||    
T  1217296 ttctggtggattccggaaacctttatttt 1217268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 3778820 - 3778748
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatcta 379  Q
    ||||||||||||||| |||||||||||||||   |||||||||||| ||| ||||||||||||| |||||||||||    
T  3778820 tctcaatttctggtggattccggaaccctat---tttcacaagtttctcgcttgcaaacttgttcatttcaatcta 3778748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 5678438 - 5678346
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    |||||||| |||||| | ||| ||| ||||| ||||||||| ||||||||||  ||||| ||||||||||||||||||||| |||||||||||||    
T  5678438 gtttgttacttcttttagtatttaaacagaacttatgcagcttaagagacac--tttttcattcaataaaattattcgagacttttctctcaatt 5678346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 5703490 - 5703398
Alignment:
Q  218 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    |||||||| |||||| | ||| ||| ||||| ||||||||| ||||||||||  ||||| ||||||||||||||||||||| |||||||||||||    
T  5703490 gtttgttacttcttttagtatttaaacagaacttatgcagcttaagagacac--tttttcattcaataaaattattcgagacttttctctcaatt 5703398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 1220666 - 1220613
Alignment:
Q  212 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagag 265  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  1220666 ccacgagtttgttatttctttcactatataaacagaacttatgtagcctaagag 1220613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 1369782 - 1369861
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttta 385  Q
    ||||||||||||||| ||||||||||||||   |||| |||||||| ||| ||||||||||||||  ||||||||||||||||    
T  1369782 tctcaatttctggtggattccggaacccta---ttttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggttta 1369861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 27142643 - 27142722
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttta 385  Q
    |||||||||||||||  ||| ||||||||||   |||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  27142643 tctcaatttctggtggtttcaggaaccctat---tttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggttta 27142722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 1220522 - 1220459
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct 400  Q
    ||||||||||||||||| ||||||||||||| ||||| || |||||||||| ||||| ||||||    
T  1220522 ttttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggtttagcgtttgctaaccct 1220459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 4888795 - 4888721
Alignment:
Q  306 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtt 383  Q
    |||||||||||||||||||||||| ||||   ||||||| |||||||| |||||||||||||  |||| |||||||||    
T  4888795 tcaatttctggtgaattccggaactctat---tttcacaggtttgtcgcttgcaaacttgttcttttctatctaggtt 4888721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 11228960 - 11229045
Alignment:
Q  306 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagcatttgc 393  Q
    ||||||||||||| |||| ||||||||   ||||||||| ||||||||  |||||||||||| | ||||||||||||||||||| ||||    
T  11228960 tcaatttctggtggattctggaaccct---tttttcacacgtttgtcgcctgcaaacttgttctttttcaatctaggtttagcacttgc 11229045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 13882768 - 13882691
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  13882768 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 13882691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 13886241 - 13886164
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagcatttgcgaaccct-tgcttccgtactg 413  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||  |||| ||||||  ||||||||||||    
T  13886241 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactg 13886164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 11000935 - 11000857
Alignment:
Q  307 caatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    |||||||||||| ||||| ||||||||   ||||||| ||||||||| |||| |||||||||  ||||||||||||||||||    
T  11000935 caatttctggtggattcctgaacccta---ttttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagc 11000857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 27309697 - 27309646
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  27309697 ttttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 27309646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 859238 - 859188
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  859238 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 1217242 - 1217192
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  1217242 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagc 1217192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 1883496 - 1883546
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttag 386  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  1883496 ttttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttag 1883546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 1753680 - 1753628
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagca 388  Q
    ||||||||||||||||| ||||||||||||||  ||||||| |||||||||||    
T  1753680 ttttcacaagtttgtcgcttgcaaacttgtttcttttcaatttaggtttagca 1753628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 1365624 - 1365729
Alignment:
Q  278 attcaataaaattattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatc 377  Q
    ||||||||| ||| || |||| ||| ||||||||| ||||| |||  ||||||||||   |||||||||||  ||| || ||||||||||  ||||||||    
T  1365624 attcaataatatt-ttagagagtttttctcaatttttggtggattatggaaccctat---tttcacaagttcatcgcttacaaacttgttcctttcaatc 1365719  T
Q  378 taggtttagc 387  Q
    ||||||||||    
T  1365720 taggtttagc 1365729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 5934611 - 5934662
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    ||||||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  5934611 ttttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggtttagc 5934662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 1874545 - 1874595
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttag 386  Q
    ||||||||||||||||| ||||||||||||||  |||||||| ||||||||    
T  1874545 ttttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttag 1874595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 30217822 - 30217871
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||| |||||| || ||||||||||||||||||    
T  30217822 ttttcacaagtttgtcgcttgcgaacttg-ttctttcaatctaggtttagc 30217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 393
Target Start/End: Original strand, 1786663 - 1786747
Alignment:
Q  307 caatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggtttagcatttgc 393  Q
    ||||||||| || |||| ||||||||||   |||| || |||||||| ||||||||||||| | |||| |||||||||||||| ||||    
T  1786663 caatttctgatggattctggaaccctat---tttcgcatgtttgtcgcttgcaaacttgttatttttctatctaggtttagcacttgc 1786747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 4133356 - 4133299
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttat-ttcaatctaggtttagcatttgc 393  Q
    ||||||||||||||||| ||| ||| ||||| || ||||||||| |||||||||||||    
T  4133356 ttttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgc 4133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 8916489 - 8916410
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggttta 385  Q
    ||||||||||||||| ||||| |||| ||||   || ||||||||| ||| ||||||||||||| | ||| ||||||||||||    
T  8916489 tctcaatttctggtggattccagaactctat---ttccacaagtttatcgtttgcaaacttgttcattttaaatctaggttta 8916410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 6659556 - 6659449
Alignment:
Q  219 tttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtg 318  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  6659556 tttgttatttctttcactatataagcagaacttatgtagcctaagaggca-actttttgattcactaaaactattcgagattttctctcaa-ttctggtg 6659459  T
Q  319 aattccggaa 328  Q
     |||||||||    
T  6659458 gattccggaa 6659449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 24667541 - 24667678
Alignment:
Q  210 gtccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctca 308  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||| ||||  |||| ||| | ||||||||| |||||||| |    
T  24667541 gtccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac-ttttatttcattaataatattcgagacttttctct-a 24667638  T
Q  309 atttctggtgaattccggaaccctatatttttcacaagtttgt 351  Q
     ||||| ||| ||||||||||||||   |||||||||||||||    
T  24667639 ttttctagtggattccggaacccta---ttttcacaagtttgt 24667678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 13085286 - 13085214
Alignment:
Q  250 ttatgcagcctaagagacacactttttgattcaataaaattattcgagattttctctcaatttctggtgaattccg 325  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  13085286 ttatgcagcctaagagacac--ttttttattcaataaaattattcgagattttctctcaattt-tggtggattccg 13085214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 22691178 - 22691281
Alignment:
Q  223 ttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatttctggtgaat 321  Q
    |||||||||||||||||||||||||| ||||| |||||||||| |||||||||  ||||| ||| | ||||| ||| ||||||||||| |||||||| ||    
T  22691178 ttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt--attcattaataatattcaagacttttctctcaa-ttctggtggat 22691274  T
Q  322 tccggaa 328  Q
    |||||||    
T  22691275 tccggaa 22691281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 40206101 - 40206206
Alignment:
Q  278 attcaataaaattattcgagattttctctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatc 377  Q
    ||||||||| ||| || |||| ||| |||||||||||||||||||||| ||| ||||   |||||||||||||||| |||| ||||||| | |||||||     
T  40206101 attcaataatatt-ttagagaatttttctcaatttctggtgaattccgaaacactat---tttcacaagtttgtcgcttgcgaacttgtctctttcaatt 40206196  T
Q  378 taggtttagc 387  Q
    ||| ||||||    
T  40206197 tagatttagc 40206206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 13086312 - 13086270
Alignment:
Q  269 cactttttgattcaataaaattattcgagattttctctcaatt 311  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  13086312 cactttttaattcaataaaattattcgagattttctctcaatt 13086270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 38888102 - 38888023
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttta-tttcaatctaggttta 385  Q
    |||||||||||  || |||||| ||||||||   |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  38888102 tctcaatttctaatggattccgaaaccctat---tttcacaagtttgtcgcttgcaaatttgtttattttcaatctaggttta 38888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 4053007 - 4053101
Alignment:
Q  215 cgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga-ttttctctcaatt 311  Q
    |||||||||||||||||| | ||| ||| || || ||||||| |||||||||| |   |||| ||||||||||| ||||||||| |||||||||||||    
T  4053007 cgagtttgttatttcttttagtatttaaacaaaacttatgcaacctaagagactc---ttttcattcaataaaaatattcgagacttttctctcaatt 4053101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 10494880 - 10494958
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggttt 384  Q
    |||||||||||||||||||||||||| |||   |||||||| |||||||  ||||||||||||||  |||| ||||||||||    
T  10494880 tctcaatttctggtgaattccggaactcta---ttttcacaggtttgtcacttgcaaacttgtttcttttccatctaggttt 10494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 298
Target Start/End: Complemental strand, 2053238 - 2053156
Alignment:
Q  214 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 298  Q
    |||||||||||||||| || | ||| ||| || || ||||||||||||||||  | |||| || |||||||||||||||||||||    
T  2053238 acgagtttgttatttcatttagtatttaaacataacttatgcagcctaagag--agacttattcattcaataaaattattcgaga 2053156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 6659412 - 6659362
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||||||||||||| |||||||||||||  |||| |||||| ||||||    
T  6659412 ttttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagc 6659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 9260550 - 9260611
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt 368  Q
    ||||||||||||||| |||| | ||||||||   |||| ||||||||||| ||||||||||||||    
T  9260550 tctcaatttctggtggattctgaaaccctat---tttcgcaagtttgtcgtttgcaaacttgttt 9260611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 18689633 - 18689552
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgttt-atttcaatctaggtttagc 387  Q
    ||||||||||||||| |||| | |||||||   |||| ||||||||||||  ||||||||| |||  ||||||||||||||||||    
T  18689633 tctcaatttctggtggattctgcaacccta---tttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagc 18689552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 7634057 - 7634136
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtt-tatttcaatctaggttta 385  Q
    ||||||||||||||| ||||| |||| |||   ||| ||||||||| ||| |||||||||||||   ||||||||||||||||    
T  7634057 tctcaatttctggtggattccagaactcta---tttccacaagtttatcgtttgcaaacttgttccttttcaatctaggttta 7634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 1635 - 1713
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 385  Q
    |||||| |||||||| ||||| ||||| |||   ||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  1635 tctcaaattctggtggattccagaaccatat---tttgacaagtttgtcgtttgcaaacttgtttctttcaatctaggttta 1713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 14826 - 14904
Alignment:
Q  306 tcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    ||||||| ||||| ||||||||  |||||   |||||||||||| ||| |||| ||||| |||||||||||| |||||||||    
T  14826 tcaatttttggtggattccggattcctat---tttcacaagtttttcgcttgccaacttatttatttcaatcaaggtttagc 14904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 17647 - 17695
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggttta 385  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  17647 ttttgacaagtttgtcgtttgcaaacttgtttctttcaatctaggttta 17695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 37718 - 37768
Alignment:
Q  337 ttttcacaagtttgtcggttgcaaacttgtttatttcaatctaggtttagc 387  Q
    |||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  37718 ttttcataagtttgtcgcttgcaaacttgttcttttcaatctaggtttagc 37768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 9679 - 9759
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaa--gtttgtcggttgcaaacttgtttatttcaatctaggttta 385  Q
    ||||||||||||||| ||| ||||||||||   |||||||||  ||| |||| ||| |||||||||  ||||||||||||||||    
T  9679 tctcaatttctggtggatttcggaacccta---ttttcacaagtgttagtcgcttggaaacttgttcttttcaatctaggttta 9759  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 145711 - 145792
Alignment:
Q  304 tctcaatttctggtgaattccggaaccctatatttttcacaagtttgtcggttgcaaacttg-tttatttcaatctaggtttagc 387  Q
    ||||||||| ||||| ||||  ||||||||| |||   ||||| |||||| ||||||||||| ||| ||||||||||||||||||    
T  145711 tctcaatttttggtggattctagaaccctattttt---acaagcttgtcgcttgcaaacttgatttttttcaatctaggtttagc 145792  T

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