View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_31 (Length: 386)
Name: NF14819_high_31
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 28171239 - 28171389
Alignment:
| Q |
173 |
ataacttttctcccatttgcattggttttcgatcttaggcatgaatatgatacgacaaaatgttaaaacacagacgcactgcgaccttcacaattgcaga |
272 |
Q |
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| T |
28171239 |
ataacttttctcccatttgcattggttatcgatcttagtcatgaatataatacgacaaaatgttaaaacacagacgcactgcgacctgtacaattgcaga |
28171338 |
T |
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| Q |
273 |
cacagagacatcaaaaagcatgatgcaaccagaccttgaatatgactaatg |
323 |
Q |
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| T |
28171339 |
cacaaagacatcaaaaaacatgatgcaaccagaccttgaatatgactaatg |
28171389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 28171004 - 28171045
Alignment:
| Q |
117 |
atgtgggacttatcttattattttgaagactgtactcactct |
158 |
Q |
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| T |
28171004 |
atgtgggacttatcttattattttgaagagtgtactcactct |
28171045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 28161449 - 28161529
Alignment:
| Q |
180 |
ttctcccatttgcattggttttcgatcttaggcatgaatatgatacgacaaaatgttaaaacacagacgcactgcgacctt |
260 |
Q |
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| T |
28161449 |
ttctcccatttgtattggttttcaatcttaatcatgactataatatgataaattgttaaaacgcaaacgcgctgcgacctt |
28161529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 28152857 - 28152896
Alignment:
| Q |
117 |
atgtgggacttatcttattattttgaagactgtactcact |
156 |
Q |
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| T |
28152857 |
atgtgggacttctcttattattttgaagagtgtactcact |
28152896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 1614715 - 1614807
Alignment:
| Q |
15 |
atgaagatggttttattgtttaaatcaagaaggacaacacctttgacattttgcttgtaacccaagaaaatagattttcttgctctagaatct |
107 |
Q |
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| T |
1614715 |
atgaaaatggttttggtgtttaaatcaagaagaatagcacctttgacactttgcttataacccaagaaaatgcatttcttagctctagaatct |
1614807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 8836553 - 8836518
Alignment:
| Q |
68 |
cttgtaacccaagaaaatagattttcttgctctaga |
103 |
Q |
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| T |
8836553 |
cttgtaacccaagaaaacagattttcttgctctaga |
8836518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 55310488 - 55310453
Alignment:
| Q |
68 |
cttgtaacccaagaaaatagattttcttgctctaga |
103 |
Q |
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| T |
55310488 |
cttgtaacccaagaaaacagattttcttgctctaga |
55310453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 1609559 - 1609623
Alignment:
| Q |
21 |
atggttttattgtttaaatcaagaaggacaacacctttgacattttgcttgtaacccaagaaaat |
85 |
Q |
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| T |
1609559 |
atggttttggtgtttaaatcaagaagtatagtacgtttgacactttgcttataacccaagaaaat |
1609623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 26472456 - 26472421
Alignment:
| Q |
68 |
cttgtaacccaagaaaatagattttcttgctctaga |
103 |
Q |
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| T |
26472456 |
cttgtaacccaagaaaacagattttcttgctctaga |
26472421 |
T |
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