View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_35 (Length: 353)
Name: NF14819_high_35
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 7554091 - 7554417
Alignment:
| Q |
9 |
tccaagaatataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnn |
108 |
Q |
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| T |
7554091 |
tccaacaacataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaa |
7554190 |
T |
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| Q |
109 |
nnnnngaaacatttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttc |
208 |
Q |
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| T |
7554191 |
aaaaagaaaaatttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttc |
7554290 |
T |
|
| Q |
209 |
gtaactccaatcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554291 |
gtaactccaatcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattc |
7554390 |
T |
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| Q |
309 |
tgcaaattaatctctttgagtagcgtg |
335 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7554391 |
tgcaaattaatctctttgagtagcgtg |
7554417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 3438824 - 3438786
Alignment:
| Q |
244 |
ttctcaatgatggccttgaaactaccatctcgtcaacaa |
282 |
Q |
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| T |
3438824 |
ttctcaatgatggctttgaaaataccatctcgtcaacaa |
3438786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 9411195 - 9411235
Alignment:
| Q |
246 |
ctcaatgatggccttgaaactaccatctcgtcaacaatatt |
286 |
Q |
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| T |
9411195 |
ctcaatgacggccttgaaaataccatatcgtcaacaatatt |
9411235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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