View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_4 (Length: 587)
Name: NF14819_high_4
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 45123073 - 45123629
Alignment:
| Q |
18 |
actttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaaaacaaacaaagtgatacttatatataagctcgatttctgtatttcaa |
117 |
Q |
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| T |
45123073 |
actttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaagacaaacaaagtgatacctatatataagctcgatttctgtatttcaa |
45123172 |
T |
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| Q |
118 |
gatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttg |
217 |
Q |
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| T |
45123173 |
gatacatcaatcagaaatattttaagtatatatctgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttg |
45123272 |
T |
|
| Q |
218 |
gagattgtgggtgtaccgggatcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtattattttctagttgttattggacaatgat |
317 |
Q |
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| T |
45123273 |
gagattgtgggtgtatcggggtcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtattattttctagttgtcattggacaatgat |
45123372 |
T |
|
| Q |
318 |
catagtttcgtctccgctttttgaagtttccacctatgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaac |
417 |
Q |
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| T |
45123373 |
catagtttcgtctccgctttttgaagtttctacctatgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaac |
45123472 |
T |
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| Q |
418 |
tatgaaaaatgtttctcaaatgtatccttctatgaatgtctattacagaatattatgaatattagtgatgatgtattgattaaatgtatttttaacggtc |
517 |
Q |
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| T |
45123473 |
tatgaaaaatgtttctcaaatatatccttctatgaatgtctattacaaaatattatgaatattagtgatgatgtattgattaaatgtatttttaacggtc |
45123572 |
T |
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| Q |
518 |
ttcatctcagagagaagagtacaatatttaacagtgtaaactaaagatgagaattatcta |
577 |
Q |
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| T |
45123573 |
ttcatctcagagagaatagtacaatatttgacagtgtaa---aaagatgacaattatcta |
45123629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 22190691 - 22190644
Alignment:
| Q |
267 |
ttgtaaaagtttgcatatagtattattttctagttgttattggacaat |
314 |
Q |
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| T |
22190691 |
ttgtaaaaatttgcatatagtgttattctctagttgtcattggacaat |
22190644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 35397486 - 35397399
Alignment:
| Q |
89 |
tatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatact |
176 |
Q |
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| T |
35397486 |
tatatataaactctctttctttattataagatgcatcagtcagaaacattttaagtttatatgtgacattttccttttctcttatact |
35397399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 12467205 - 12467149
Alignment:
| Q |
24 |
ttgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaaaacaaacaaa |
80 |
Q |
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| T |
12467205 |
ttgcttgataagttttgtaggccacaagcttgtttcttgaagtgcaagacaaacaaa |
12467149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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