View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_43 (Length: 328)
Name: NF14819_high_43
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 48350656 - 48350747
Alignment:
| Q |
33 |
ttgatatacatactcaaaggagtttgctaactatgcatatatgatttatttatttttactaaaactatgcataaatatgatatatactaaag |
124 |
Q |
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| T |
48350656 |
ttgatatacatactcaaaggagtttgctaactatgcatatatgatttatttatttttactaaaactatgcataaatatgatatatactaaag |
48350747 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 48350858 - 48350937
Alignment:
| Q |
233 |
ccgttatcataataaaaatggaaaataattacttataagtaacgtggatgtaatattaagtagaaaatacaattgaaaaa |
312 |
Q |
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| T |
48350858 |
ccgttatcataataaaaattgaaaataattacttataagtgacgtggatgtaatattaagtagaaaatacaattgaaaaa |
48350937 |
T |
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