View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_high_5 (Length: 587)

Name: NF14819_high_5
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_high_5
NF14819_high_5
[»] chr3 (14 HSPs)
chr3 (4-568)||(1717461-1718025)
chr3 (4-210)||(1738958-1739164)
chr3 (468-568)||(1739395-1739495)
chr3 (4-174)||(1754129-1754300)
chr3 (4-123)||(1748813-1748932)
chr3 (478-566)||(1749254-1749342)
chr3 (486-566)||(1754877-1754957)
chr3 (290-371)||(46893416-46893497)
chr3 (317-371)||(13639459-13639513)
chr3 (290-442)||(54186928-54187080)
chr3 (290-371)||(29235677-29235758)
chr3 (303-371)||(48543213-48543281)
chr3 (302-371)||(20909363-20909432)
chr3 (339-371)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (290-372)||(30085447-30085529)
chr8 (290-371)||(33440574-33440655)
chr8 (290-371)||(28700583-28700664)
chr8 (293-371)||(6580862-6580939)
chr8 (319-369)||(31703822-31703872)
chr8 (290-354)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (287-372)||(51475233-51475318)
chr4 (303-371)||(31699549-31699617)
chr4 (307-371)||(37306476-37306540)
chr4 (295-372)||(6540258-6540335)
chr4 (317-371)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (304-371)||(709-776)
[»] chr5 (7 HSPs)
chr5 (287-371)||(41020248-41020332)
chr5 (309-371)||(42958487-42958549)
chr5 (303-371)||(5990589-5990657)
chr5 (303-371)||(18237206-18237274)
chr5 (303-371)||(30892150-30892218)
chr5 (303-371)||(32153763-32153831)
chr5 (316-388)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (316-371)||(932035-932090)
chr1 (290-363)||(11709656-11709729)
chr1 (290-371)||(19078941-19079022)
chr1 (290-371)||(19126829-19126910)
chr1 (303-369)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (290-372)||(17878710-17878792)
chr7 (303-371)||(557447-557515)
chr7 (316-372)||(47822035-47822091)
chr7 (290-371)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (303-369)||(5140042-5140108)
chr2 (287-363)||(864178-864254)
chr2 (303-371)||(6951739-6951808)
chr2 (292-385)||(16011989-16012082)
chr2 (303-371)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (290-371)||(7447636-7447716)
chr6 (290-370)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 4 - 568
Target Start/End: Original strand, 1717461 - 1718025
Alignment:
Q  4 atcacataagtatttgggatgcatttcctcacaacatcataagcttccctgtaatagctcttcaggctatctagattgacacctagtggcttattcatca 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  1717461 atcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcattcatca 1717560  T
Q  104 gctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattggttaaca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  1717561 gctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagtttcgagtaggtaattcatttggttaaca 1717660  T
Q  204 aagttttaaataaggagagtgaatcttagagaaagttctagtaagagtgttcctagcattctgtctaaggaggaatgccatgtacactctctaacatcta 303  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || |    
T  1717661 aagttttaaataaggagagtgaatcttagagaaagtgccagtaagagtgttcctagcattctgtctaaggagaaatgctatgtacattctctaacgtcca 1717760  T
Q  304 ctctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatctaatacgagggtaaa 403  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||||||| || |     
T  1717761 ctttcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgagatccatatagatttcatctaatacgagagtgag 1717860  T
Q  404 tgttnnnnnnngtgttagtaagagagtgttcttaacattctgtttcaggaatatatgaataaattttagatatatagatacaaaacctttttgctaagaa 503  Q
    ||||       || ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717861 tgttagaaaaagtattagtaagagagtgttcttaacattctgcctgaggaatatatgaataaattttagatatatagatacaaaacctttttgctaagaa 1717960  T
Q  504 ttctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcc 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717961 ttctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcc 1718025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 1738958 - 1739164
Alignment:
Q  4 atcacataagtatttgggatgcatttcctcacaacatcataagcttccctgtaatagctcttcaggctatctagattgacacctagtggcttattcatca 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  | |||||||| |||| ||||||||| |||||||||| ||||||| ||||||||    
T  1738958 atcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcattcatca 1739057  T
Q  104 gctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattggttaaca 203  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||     
T  1739058 gctctattcctcctaaactttttctattattatatctgtaaacaagttcaattcatgtataaagatatcagtttcgagtaggtaattcatttggtgaact 1739157  T
Q  204 aagtttt 210  Q
    |||||||    
T  1739158 aagtttt 1739164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 468 - 568
Target Start/End: Original strand, 1739395 - 1739495
Alignment:
Q  468 tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc 567  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  1739395 tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc 1739494  T
Q  568 c 568  Q
    |    
T  1739495 c 1739495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 1754129 - 1754300
Alignment:
Q  4 atcacataagtatttgggatgcatttcctcacaacatcataagcttccctgtaatagctcttcaggctatctagattgacacctagtggcttattcatca 103  Q
    |||||||||| ||||||  || ||||||||||  |||||||||| ||| |||||||  |||| ||||||||||||||||||||| |||||| ||||||||    
T  1754129 atcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcattcatca 1754228  T
Q  104 gctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtat-aaagaaatcag 174  Q
     |||||||||||||||||||  ||||| ||  || ||||  |||| ||||||||| |||| |||||||||||    
T  1754229 actctattcctcctaaacttggtctattaccatacctgtccacaaattcaattcaagtatcaaagaaatcag 1754300  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 1748813 - 1748932
Alignment:
Q  4 atcacataagtatttgggatgcatttcctcacaacatcataagcttccctgtaatagctcttcaggctatctagattgacacctagtggcttattcatca 103  Q
    ||||||||||  | |||| || |||| |||||| ||||||||||| || |||||||  |||| || ||||| |||||||||||| |||||| ||||||||    
T  1748813 atcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatca 1748912  T
Q  104 gctctattcctcctaaactt 123  Q
    ||||||||||||||||||||    
T  1748913 gctctattcctcctaaactt 1748932  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 1749254 - 1749342
Alignment:
Q  478 tagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgt 566  Q
    |||||||||||||||| ||||||||| || || ||||  ||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  1749254 tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgt 1749342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 566
Target Start/End: Original strand, 1754877 - 1754957
Alignment:
Q  486 aaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgt 566  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||| | |||||||||| || |||||||||||||    
T  1754877 aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgt 1754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 46893497 - 46893416
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||   ||||||||||| | |||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  46893497 ctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 13639459 - 13639513
Alignment:
Q  317 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  13639459 tgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgaga 13639513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 442
Target Start/End: Complemental strand, 54187080 - 54186928
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatct 389  Q
    ||||||||||   |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| |||||||||| | |||  ||||| |     
T  54187080 ctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcaccc 54186981  T
Q  390 aatacgagggtaaatgttnnnnnnngtgttagtaagagagtgttcttaacatt 442  Q
    |||| ||| || ||||||       ||||||| ||||||||||||||| ||||    
T  54186980 aataggagagtgaatgttagagagagtgttagaaagagagtgttcttagcatt 54186928  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 29235677 - 29235758
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||   |||||||||||  |||||||||||| ||||| || | ||| ||||||||||  ||||||||||||||||    
T  29235677 ctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgaga 29235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 48543281 - 48543213
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||  ||||||||||||||| || || | |||||||||||| | |||||||| ||||||||    
T  48543281 actctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgaga 48543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 20909432 - 20909363
Alignment:
Q  302 tactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||||  |||||||||| ||||  | ||  ||||| ||||||||| |||||||||||||||||    
T  20909432 tactctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgaga 20909363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 54140812 - 54140844
Alignment:
Q  339 tattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||||||| |||||||||||||||||    
T  54140812 tattggaaatggatcccacataaagtggtgaga 54140844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 30085529 - 30085447
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 372  Q
    ||||||||||  |||||||||||| |||||||||||||||  | ||| || ||||||||||||| ||||||||||||||||||    
T  30085529 ctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagat 30085447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 33440655 - 33440574
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||  |||||||||||  |||||| |||||||| || || | |||||||||||||| |||||||||||||||||    
T  33440655 ctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 33440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 28700583 - 28700664
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||   |||||||||||  || ||||| |||||| || || |||||||||||| ||| |||||||||||||||||    
T  28700583 ctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 28700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 6580862 - 6580939
Alignment:
Q  293 tctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||  || ||||||||  ||||||||||||||| || || | ||||||||| |||| |||||||||||||||||    
T  6580862 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgaga 6580939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 31703872 - 31703822
Alignment:
Q  319 aaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 369  Q
    ||||| |||||||||||| |  ||||||||||||| |||||||||||||||    
T  31703872 aaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 16895271 - 16895335
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatca 354  Q
    ||||||||||   ||||||||||| | | ||||||||||||||| || |||||| ||||||||||    
T  16895271 ctctctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatca 16895335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 51475318 - 51475233
Alignment:
Q  287 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 372  Q
    ||||||||||||| | |||||||||||  ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  51475318 acactctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 51475233  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 31699617 - 31699549
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||  ||||||||||||||| ||||| | |||||||||||| | |||||||| ||||||||    
T  31699617 actctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgaga 31699549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 37306540 - 37306476
Alignment:
Q  307 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||  ||||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  37306540 tcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgaga 37306476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 6540258 - 6540335
Alignment:
Q  295 taacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 372  Q
    ||||||| |||||||||||  |||||||  |||||| ||||| | ||||||||||||||  ||| |||||||||||||    
T  6540258 taacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagat 6540335  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 43480299 - 43480353
Alignment:
Q  317 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||||| || || | |||| ||||||||| |||||||||||||||||    
T  43480299 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 43480353  T

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Target: scaffold0922 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 709 - 776
Alignment:
Q  304 ctctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||| ||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgaga 776  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 287 - 371
Target Start/End: Complemental strand, 41020332 - 41020248
Alignment:
Q  287 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||||| | |||||||||||  |||||||  |||||| || || |||||||||||| ||| |||||||||||||||||    
T  41020332 acactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 41020248  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 42958487 - 42958549
Alignment:
Q  309 ttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||| ||||||||||||||| || ||   |||||||||||||| |||||||||||||||||    
T  42958487 ttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgaga 42958549  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 5990657 - 5990589
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| |||||||| ||||||||    
T  5990657 actcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 18237274 - 18237206
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||| |||||  ||||||||||||||| ||||| | |||| |||| |||| |||||||||||||||||    
T  18237274 actcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgaga 18237206  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 30892150 - 30892218
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| ||||||||    
T  30892150 actctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgaga 30892218  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 32153831 - 32153763
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||  ||||||  |||||||||  || |  ||||||||||||| |||||||||||||||||    
T  32153831 actctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgaga 32153763  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 34320985 - 34320913
Alignment:
Q  316 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatc 388  Q
    ||||||| |||||||||| || |  ||| |||| |||| ||||||||||||||||| | | ||||||||||||    
T  34320985 gtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacatggatttcatc 34320913  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 932035 - 932090
Alignment:
Q  316 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  932035 gtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgaga 932090  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 11709729 - 11709656
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 363  Q
    ||||||||||   ||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||    
T  11709729 ctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 19078941 - 19079022
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19078941 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19079022  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 19126829 - 19126910
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19126829 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19126910  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 14562669 - 14562603
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 369  Q
    ||||||||||| ||||||||| |||| | || || |  ||||||||||||| |||||||||||||||    
T  14562669 actctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 17878710 - 17878792
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 372  Q
    |||| |||||| ||||||||||||  |||||| |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||    
T  17878710 ctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagat 17878792  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 557515 - 557447
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||   |||||||||||||| ||||| | |||  ||||||||| |||||||||||||||||    
T  557515 actctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgaga 557447  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 47822035 - 47822091
Alignment:
Q  316 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 372  Q
    ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  47822035 gtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 43930110 - 43930030
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||   ||||| |||||  ||||||||||||||| || || | |||| |||||||||||| ||||||||||||||    
T  43930110 ctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga 43930030  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 5140108 - 5140042
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 369  Q
    ||||||||||| |||||||||||||||| || || | |||| ||||||||| |||||||||||||||    
T  5140108 actctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 5140042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 864254 - 864178
Alignment:
Q  287 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 363  Q
    |||||||||||||   |||||||||||  ||||||||||||||| || || | ||| |||||||||| |||||||||    
T  864254 acactctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaag 864178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 6951739 - 6951808
Alignment:
Q  303 actctcttatttagtgaaa-ttcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||||||||| ||||||| ||||||||| |  || | |||| ||||||||| |||||||||||||||||    
T  6951739 actctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgaga 6951808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 16012082 - 16011989
Alignment:
Q  292 ctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttc 385  Q
    |||||||| ||||| ||||||| | | |||| ||||||||||  | || |||||||| ||| | |||||||||||||||||  |||| ||||||    
T  16012082 ctctaacacctactttcttattgaataaaatacatgtggatactacattttggaaatagattaaacataaagtggtgagatccatatagatttc 16011989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 37285253 - 37285185
Alignment:
Q  303 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| ||| ||||||| |||||    
T  37285253 actcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 7447716 - 7447636
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 371  Q
    |||||||||||| |||||||| ||  ||||||||||||||| || || | ||| |||||||||| |||||||||||||||||    
T  7447716 ctctctaacatc-actctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgaga 7447636  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 32439506 - 32439586
Alignment:
Q  290 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgag 370  Q
    ||||||||||   |||||||||||  ||||||||||||||| || || | |||||||||||||| ||||||||| ||||||    
T  32439506 ctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgag 32439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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