View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_high_52 (Length: 307)

Name: NF14819_high_52
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_high_52
NF14819_high_52
[»] chr5 (1 HSPs)
chr5 (5-289)||(29272777-29273061)
[»] chr6 (1 HSPs)
chr6 (5-290)||(18811994-18812282)
[»] chr8 (1 HSPs)
chr8 (14-217)||(29230054-29230257)
[»] chr7 (3 HSPs)
chr7 (1-229)||(12975177-12975418)
chr7 (5-138)||(40435277-40435410)
chr7 (221-291)||(32353780-32353850)
[»] chr4 (8 HSPs)
chr4 (5-124)||(6801145-6801264)
chr4 (79-133)||(27067205-27067259)
chr4 (79-133)||(27087918-27087972)
chr4 (225-291)||(43290682-43290748)
chr4 (196-290)||(27066217-27066310)
chr4 (199-290)||(27087320-27087410)
chr4 (5-51)||(27067262-27067308)
chr4 (5-51)||(27087975-27088021)
[»] chr3 (3 HSPs)
chr3 (5-126)||(53834779-53834900)
chr3 (221-290)||(14656719-14656788)
chr3 (8-199)||(7137953-7138145)
[»] chr1 (2 HSPs)
chr1 (143-291)||(24188774-24188922)
chr1 (5-95)||(24188921-24189011)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 29273061 - 29272777
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttacca 104  Q
    |||| ||||||||||||| | |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273061 aaaaataaaatggatagtctttcaaaaaattgacaagcgacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttacca 29272962  T
Q  105 tcactctcaatttttgtattggacataatccatcccccttcgatgtatatatagttctca--gtaatgatgcatcacaaataatacattgaccaagacgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||   ||  | || ||||||||||||||||| || |||||||    
T  29272961 tcactctcaatttttgtattggacataatccatcccccttcgatgtataaatatttttcactatacagttgtatcacaaataatacattaactaagacgt 29272862  T
Q  203 ctctcagtcagtatctcacatatatattatcaaaatatcatctatgatatattatcataggtttgcttagttaaattctaagcaaca 289  Q
    ||||||||||||||||  ||||||||||||||||  | |||||||||||||| |||||||||||||||| ||||||| ||| |||||    
T  29272861 ctctcagtcagtatct--catatatattatcaaatcaacatctatgatatatcatcataggtttgcttaattaaattataatcaaca 29272777  T

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Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 290
Target Start/End: Original strand, 18811994 - 18812282
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttacca 104  Q
    |||||||||||||||||||||| || |||||||||||  ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18811994 aaaattaaaatggatagtgtctaatcaaattgacaagtgacttgttcttacccatatgaacatagctttgcgaattttcacaatctatgttgggttacca 18812093  T
Q  105 tcactctcaatttttgtattggacataatccatcccccttcgatg----tatatatagttctca--gtaatgatgcatcacaaataatacattgaccaag 198  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    |||||||| | ||||   || |||||||||||||||||||||||||  |||    
T  18812094 tcactctcaatttttgtattggacataattcatccccctt-gatgtatatatatatattactcattatattgatgcatcacaaataatacattgagtaag 18812192  T
Q  199 acgtctctcagtcagtatctcacatatatattatcaaaatatcatctatgatatattatcataggtttgcttagttaaattctaagcaacaa 290  Q
    |||||||||||| | |||||  ||||||||||||||||  |||||||||||||||||||||||  ||||||||  |||||| ||||||||||    
T  18812193 acgtctctcagtgactatct--catatatattatcaaatcatcatctatgatatattatcataaatttgcttaaataaattttaagcaacaa 18812282  T

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Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 29230054 - 29230257
Alignment:
Q  14 atggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttaccatcactctca 113  Q
    |||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  29230054 atggatagtgtctcatcaaaatgacaagcgacttgttcttacccatatgaacatagcgttgctaattttcacaatctatgttgtgttaccatcactctca 29230153  T
Q  114 atttttgtattggacataatccatcccccttcgatgtatatatagttctca--gtaatgatgcatcacaaataatacattgaccaagacgtctctcagtc 211  Q
    |||||  | ||||||||||||||||||||||||||||||||||| ||  ||  |||    ||||||||||||||||||||||||||||||||| ||||||    
T  29230154 atttt--ttttggacataatccatcccccttcgatgtatatatattttccattgtacaactgcatcacaaataatacattgaccaagacgtctatcagtc 29230251  T
Q  212 agtatc 217  Q
    | ||||    
T  29230252 actatc 29230257  T

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Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 12975418 - 12975177
Alignment:
Q  1 tcttaaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggtt 100  Q
    ||||| || |||||||||||||||||||| |||||||||| | ||||||| ||| |||||||||| || |||||| |||||||||||| |||||||||||    
T  12975418 tcttacaaataaaatggatagtgtctcatcaaattgacaaacgacttgttcttaaccatatgaacgtaaccttgcgaattttcacaatttatgttgggtt 12975319  T
Q  101 accatcactctcaatttttgtattggacataatccatcccccttcgatgtatatatagttctcagta-----atgatg--------catcacaaataata 187  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||     | | ||         |||||||||||||    
T  12975318 accatcgctctcaatttttgtattggacataatccatccccctttgatgtatatatatttttcactatacataagctgtatcaacaaatcacaaataata 12975219  T
Q  188 cattgaccaagacgtctctcagtcagtatctcacatatatat 229  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  12975218 cattggccaagacgtctctcagtcagtatctcatatatatat 12975177  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 40435410 - 40435277
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttacca 104  Q
    |||| |||||||||||||||||||| ||||||||||  ||||| || ||||||||||||| |   | ||    ||||||||||||||| |||||||| ||    
T  40435410 aaaaataaaatggatagtgtctcatcaaattgacaaataacttattcttacccatatgaaaagttctttatgcattttcacaatctatattgggttatca 40435311  T
Q  105 tcactctcaatttttgtattggacataatccatc 138  Q
    ||||||| ||||||||||||| ||||||| ||||    
T  40435310 tcactcttaatttttgtattgaacataattcatc 40435277  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 32353780 - 32353850
Alignment:
Q  221 catatatattatcaaaatatcatctatgatatattatcataggtttgcttagttaaattctaagcaacaat 291  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||  |||| |||||||||||||    
T  32353780 catatatattatcaaaacatcatccatgatatattatcataggtttgcttaaataaactctaagcaacaat 32353850  T

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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 6801145 - 6801264
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttacca 104  Q
    |||| ||||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6801145 aaaaataaaatggacagtgtctcatcaaattgacaagcgacttgttcttacccatatgaacatagccttgcgaattttcacaatctatgttgggttacca 6801244  T
Q  105 tcactctcaatttttgtatt 124  Q
    ||||||||||||||||||||    
T  6801245 tcactctcaatttttgtatt 6801264  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 27067205 - 27067259
Alignment:
Q  79 ttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067205 ttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataat 27067259  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 27087918 - 27087972
Alignment:
Q  79 ttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27087918 ttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataat 27087972  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 43290748 - 43290682
Alignment:
Q  225 tatattatcaaaatatcatctatgatatattatcataggtttgcttagttaaattctaagcaacaat 291  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||  ||||||||||||||||||    
T  43290748 tatattatcaaaacatcatccatgatatattatcataggtttgcttaaataaattctaagcaacaat 43290682  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 27066310 - 27066217
Alignment:
Q  196 aagacgtctctcagtcagtatctcacatatatattatcaaaat-atcatctatgatatattatcataggtttgcttagttaaattctaagcaacaa 290  Q
    ||||||||||||||||| |||||||  |||||||| ||||||| |||||| |||||||||||||| |||||||||||  ||||||||||| |||||    
T  27066310 aagacgtctctcagtcaatatctca--tatatattttcaaaatcatcatccatgatatattatcacaggtttgcttaactaaattctaagtaacaa 27066217  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 27087410 - 27087320
Alignment:
Q  199 acgtctctcagtcagtatctcacatatatattatcaaaat-atcatctatgatatattatcataggtttgcttagttaaattctaagcaacaa 290  Q
    |||||||||||||| |||||||  |||||||| ||||||| |||||| |||||||||||||| |||||||||||  ||||||||||| |||||    
T  27087410 acgtctctcagtcaatatctca--tatatattttcaaaatcatcatccatgatatattatcacaggtttgcttaactaaattctaagtaacaa 27087320  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 27067308 - 27067262
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgttt 51  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||    
T  27067308 aaaattaaaatggataatgtctcaacaaattgacaagcaacttgttt 27067262  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 27088021 - 27087975
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgttt 51  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||    
T  27088021 aaaattaaaatggataatgtctcaacaaattgacaagcaacttgttt 27087975  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 53834779 - 53834900
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttacca 104  Q
    |||| ||||||||||| ||| |||| ||||||||||   ||||||| |||||| ||||||||||  |||||||||||||||||| |||||||||||||||    
T  53834779 aaaaataaaatggataatgtttcatcaaattgacaaatgacttgttcttacccttatgaacataatcttgcaaattttcacaatttatgttgggttacca 53834878  T
Q  105 tcactctcaatttttgtattgg 126  Q
    ||||||||||||||||||||||    
T  53834879 tcactctcaatttttgtattgg 53834900  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 14656788 - 14656719
Alignment:
Q  221 catatatattatcaaaatatcatctatgatatattatcataggtttgcttagttaaattctaagcaacaa 290  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  14656788 catatatattatcaaaacatcatctatgatatattatcataggtttgcttaattaaattctaagaaacaa 14656719  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 7137953 - 7138145
Alignment:
Q  8 attaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgttgggttaccatca 107  Q
    |||||||||||||||||||||   |||| |||||  || |||| ||||||||||||||||| |||||  | |||||||||| |||||||||||||| |||    
T  7137953 attaaaatggatagtgtctcaacgaattaacaagtgacctgttcttacccatatgaacata-ccttgtgatttttcacaatttatgttgggttaccgtca 7138051  T
Q  108 ctctcaatttttgtattggacat-aatccatcccccttcgatgtatatatagttctca--gtaatgatgcatcacaaataatacattgaccaaga 199  Q
    ||||| |  | | |||||||||| |||||| ||| | |||||||||||||| || |||   || |||||||| |||||||||| |||||| ||||    
T  7138052 ctctctaagtctctattggacataaatcca-cccacctcgatgtatatatatttttcattatattgatgcattacaaataataaattgacgaaga 7138145  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 143 - 291
Target Start/End: Complemental strand, 24188922 - 24188774
Alignment:
Q  143 ttcgatgtatatatagttctca--gtaatgatgcatcacaaataatacattgaccaagacgtctctcagtcagtatctcacatatatattatcaaaatat 240  Q
    ||||||||||||||| ||||||  |||  | || ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||  |     
T  24188922 ttcgatgtatatatacttctcactgtacagctgtatcacaaataatacattgaccaagacgtctctcggtcagta--tcacatatatattatcgaatcaa 24188825  T
Q  241 catctatgatatattatcataggtttgcttagttaaattctaagcaacaat 291  Q
    ||| |||||||||||||| | |||||| ||| |||||||||||||||||||    
T  24188824 catttatgatatattatcttgggtttgtttaattaaattctaagcaacaat 24188774  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 24189011 - 24188921
Alignment:
Q  5 aaaattaaaatggatagtgtctcattaaattgacaagcaacttgtttttacccatatgaacatagccttgcaaattttcacaatctatgtt 95  Q
    ||||| ||||||||||||||||||  |||||||||||  ||||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  24189011 aaaataaaaatggatagtgtctcaacaaattgacaagtgacttgttcttacccatataaacatagccttgtaaattttcacaatctatgtt 24188921  T

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