View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_high_54 (Length: 304)

Name: NF14819_high_54
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_high_54
NF14819_high_54
[»] chr3 (34 HSPs)
chr3 (19-288)||(13653963-13654232)
chr3 (131-284)||(3087588-3087741)
chr3 (183-268)||(13699425-13699510)
chr3 (195-287)||(17697658-17697750)
chr3 (131-288)||(21317438-21317595)
chr3 (199-281)||(8729017-8729099)
chr3 (199-281)||(9080904-9080986)
chr3 (185-281)||(315139-315235)
chr3 (199-288)||(16794304-16794393)
chr3 (200-288)||(11078695-11078783)
chr3 (19-97)||(27851759-27851837)
chr3 (199-288)||(22766552-22766641)
chr3 (199-287)||(16882337-16882425)
chr3 (201-277)||(27851602-27851678)
chr3 (18-104)||(13699539-13699626)
chr3 (199-269)||(19197899-19197969)
chr3 (187-281)||(20418286-20418380)
chr3 (200-288)||(16305184-16305272)
chr3 (203-270)||(2903213-2903280)
chr3 (193-276)||(10851868-10851951)
chr3 (206-277)||(11513897-11513968)
chr3 (201-280)||(14072746-14072825)
chr3 (185-267)||(13932004-13932086)
chr3 (183-281)||(14077356-14077454)
chr3 (185-269)||(17762110-17762194)
chr3 (185-269)||(19063430-19063514)
chr3 (214-281)||(4243208-4243274)
chr3 (196-270)||(27374838-27374912)
chr3 (19-104)||(16305039-16305124)
chr3 (60-99)||(12409758-12409797)
chr3 (19-85)||(20418434-20418500)
chr3 (62-99)||(3087739-3087776)
chr3 (210-270)||(15647815-15647875)
chr3 (19-87)||(16794140-16794207)
[»] scaffold0074 (1 HSPs)
scaffold0074 (24-281)||(31679-31935)
[»] chr6 (29 HSPs)
chr6 (24-270)||(24398725-24398971)
chr6 (19-270)||(13145199-13145451)
chr6 (200-276)||(18026778-18026854)
chr6 (138-281)||(31127292-31127435)
chr6 (76-288)||(23231231-23231443)
chr6 (199-276)||(32335882-32335959)
chr6 (19-288)||(26185760-26186003)
chr6 (194-288)||(16462656-16462750)
chr6 (199-269)||(18172044-18172114)
chr6 (199-269)||(23006067-23006137)
chr6 (199-269)||(23782229-23782299)
chr6 (196-266)||(25930546-25930616)
chr6 (201-276)||(7812073-7812148)
chr6 (206-276)||(10704567-10704637)
chr6 (199-288)||(21035045-21035134)
chr6 (200-265)||(25595953-25596018)
chr6 (201-276)||(24728568-24728643)
chr6 (195-256)||(17445665-17445726)
chr6 (196-268)||(12348165-12348237)
chr6 (19-86)||(10704405-10704472)
chr6 (201-288)||(30451548-30451635)
chr6 (21-99)||(31127208-31127287)
chr6 (199-270)||(19875901-19875972)
chr6 (240-282)||(17867619-17867661)
chr6 (240-282)||(17877402-17877444)
chr6 (23-97)||(20462136-20462208)
chr6 (196-266)||(23298019-23298089)
chr6 (62-99)||(15477701-15477738)
chr6 (46-128)||(9192691-9192775)
[»] chr1 (19 HSPs)
chr1 (60-265)||(18516972-18517179)
chr1 (20-269)||(26279837-26280072)
chr1 (193-288)||(23054415-23054510)
chr1 (96-276)||(18129859-18130039)
chr1 (185-288)||(21683122-21683225)
chr1 (19-270)||(9346820-9347070)
chr1 (186-267)||(16478658-16478739)
chr1 (196-287)||(16870013-16870104)
chr1 (204-266)||(2819274-2819336)
chr1 (196-266)||(20909478-20909548)
chr1 (121-288)||(26703604-26703770)
chr1 (196-266)||(17018650-17018719)
chr1 (201-269)||(31359378-31359446)
chr1 (206-256)||(20109897-20109947)
chr1 (202-246)||(24227929-24227973)
chr1 (59-99)||(31359523-31359563)
chr1 (59-104)||(8699056-8699101)
chr1 (199-270)||(1090485-1090557)
chr1 (201-269)||(8698912-8698980)
[»] scaffold0040 (1 HSPs)
scaffold0040 (26-288)||(3822-4084)
[»] chr5 (19 HSPs)
chr5 (19-288)||(31588857-31589109)
chr5 (19-270)||(20969260-20969511)
chr5 (59-288)||(27057360-27057572)
chr5 (183-281)||(26119816-26119914)
chr5 (187-286)||(13692465-13692564)
chr5 (187-286)||(39798877-39798976)
chr5 (201-282)||(17262742-17262823)
chr5 (195-279)||(2152909-2152993)
chr5 (200-268)||(20237391-20237459)
chr5 (199-270)||(23589776-23589847)
chr5 (201-277)||(27276153-27276229)
chr5 (59-127)||(39798770-39798838)
chr5 (200-286)||(34638495-34638581)
chr5 (19-86)||(13692634-13692701)
chr5 (183-270)||(22585992-22586079)
chr5 (183-270)||(34637579-34637666)
chr5 (32-104)||(20237263-20237335)
chr5 (199-267)||(20567869-20567937)
chr5 (196-266)||(16607581-16607650)
[»] chr7 (18 HSPs)
chr7 (131-270)||(18361537-18361676)
chr7 (19-288)||(9064017-9064287)
chr7 (193-270)||(13172369-13172446)
chr7 (205-270)||(14114101-14114166)
chr7 (205-270)||(14423751-14423816)
chr7 (66-276)||(16307617-16307828)
chr7 (200-269)||(16105018-16105087)
chr7 (198-276)||(5035432-5035510)
chr7 (187-281)||(18047846-18047940)
chr7 (201-270)||(15871121-15871190)
chr7 (196-266)||(16412061-16412132)
chr7 (196-286)||(7487926-7488015)
chr7 (184-270)||(11572261-11572347)
chr7 (206-270)||(16472744-16472808)
chr7 (204-270)||(2501095-2501161)
chr7 (204-246)||(16412812-16412854)
chr7 (19-83)||(18047743-18047807)
chr7 (201-269)||(23125999-23126067)
[»] chr4 (16 HSPs)
chr4 (20-288)||(14356932-14357201)
chr4 (140-276)||(2651853-2651989)
chr4 (187-288)||(18774090-18774191)
chr4 (187-288)||(20570968-20571069)
chr4 (46-287)||(13027822-13028066)
chr4 (16-99)||(2651979-2652062)
chr4 (20-127)||(14902280-14902387)
chr4 (191-254)||(14902432-14902495)
chr4 (185-268)||(17812261-17812344)
chr4 (19-93)||(18776225-18776299)
chr4 (196-268)||(10249877-10249949)
chr4 (200-275)||(18394590-18394665)
chr4 (196-282)||(16324494-16324580)
chr4 (19-104)||(18394738-18394823)
chr4 (184-269)||(20577346-20577431)
chr4 (201-269)||(17526389-17526457)
[»] scaffold0758 (2 HSPs)
scaffold0758 (133-287)||(4319-4472)
scaffold0758 (19-108)||(4479-4569)
[»] chr8 (13 HSPs)
chr8 (65-287)||(12193945-12194167)
chr8 (65-287)||(12438373-12438595)
chr8 (63-270)||(17916707-17916915)
chr8 (193-276)||(18558074-18558157)
chr8 (19-114)||(22710804-22710900)
chr8 (19-104)||(1208519-1208603)
chr8 (185-270)||(19505448-19505533)
chr8 (200-256)||(12541703-12541759)
chr8 (185-261)||(1208632-1208709)
chr8 (20-104)||(19505300-19505385)
chr8 (202-246)||(23772455-23772499)
chr8 (19-86)||(12541853-12541919)
chr8 (196-266)||(18772685-18772754)
[»] scaffold0002 (2 HSPs)
scaffold0002 (18-263)||(112277-112506)
scaffold0002 (18-109)||(116024-116116)
[»] scaffold0622 (3 HSPs)
scaffold0622 (18-172)||(1683-1838)
scaffold0622 (195-270)||(3372-3447)
scaffold0622 (196-266)||(2730-2800)
[»] chr2 (20 HSPs)
chr2 (185-277)||(19320362-19320454)
chr2 (199-286)||(24440700-24440787)
chr2 (61-270)||(21910920-21911112)
chr2 (196-276)||(24157888-24157968)
chr2 (193-268)||(20568200-20568275)
chr2 (196-270)||(21846209-21846283)
chr2 (187-288)||(22383515-22383616)
chr2 (192-276)||(10896391-10896475)
chr2 (196-262)||(24844204-24844270)
chr2 (186-270)||(25918706-25918790)
chr2 (186-277)||(14793952-14794043)
chr2 (186-285)||(15668508-15668607)
chr2 (201-277)||(19643654-19643732)
chr2 (201-270)||(33705980-33706049)
chr2 (199-266)||(24302931-24302998)
chr2 (46-99)||(15668425-15668478)
chr2 (59-88)||(19643534-19643563)
chr2 (204-269)||(22683493-22683558)
chr2 (63-107)||(24440582-24440626)
chr2 (59-99)||(25918854-25918894)
[»] scaffold0351 (2 HSPs)
scaffold0351 (18-152)||(9086-9221)
scaffold0351 (187-263)||(9217-9293)
[»] scaffold0772 (1 HSPs)
scaffold0772 (196-276)||(850-930)
[»] scaffold0522 (2 HSPs)
scaffold0522 (46-288)||(11369-11612)
scaffold0522 (46-288)||(4086-4329)
[»] scaffold0311 (1 HSPs)
scaffold0311 (199-288)||(20116-20205)
[»] scaffold0011 (1 HSPs)
scaffold0011 (199-288)||(59606-59695)
[»] scaffold0498 (1 HSPs)
scaffold0498 (200-275)||(3280-3355)
[»] scaffold0003 (3 HSPs)
scaffold0003 (196-266)||(773-844)
scaffold0003 (204-256)||(416028-416080)
scaffold0003 (204-246)||(1524-1566)
[»] scaffold0364 (1 HSPs)
scaffold0364 (63-288)||(10241-10468)
[»] scaffold0035 (1 HSPs)
scaffold0035 (196-266)||(29867-29936)
[»] scaffold1107 (1 HSPs)
scaffold1107 (205-277)||(2339-2411)
[»] scaffold0683 (2 HSPs)
scaffold0683 (19-99)||(578-658)
scaffold0683 (204-256)||(456-508)
[»] scaffold0388 (1 HSPs)
scaffold0388 (185-269)||(5445-5529)
[»] scaffold0490 (1 HSPs)
scaffold0490 (199-282)||(7378-7461)
[»] scaffold0067 (1 HSPs)
scaffold0067 (206-277)||(16400-16471)
[»] scaffold0043 (1 HSPs)
scaffold0043 (201-270)||(1813-1882)
[»] scaffold0092 (2 HSPs)
scaffold0092 (185-270)||(8151-8233)
scaffold0092 (59-104)||(8278-8323)
[»] scaffold1026 (2 HSPs)
scaffold1026 (196-270)||(3033-3107)
scaffold1026 (37-86)||(3205-3254)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 13654232 - 13653963
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtc-tgacgtcatcaagcgtctaaa 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  13654232 caaaggaagcttatgttgcaagacagggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtcttgacgtcatcaagcgtctgaa 13654133  T
Q  118 gaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaag 217  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||| |||||||||||    
T  13654132 gaccatcagagtttgaagcacatcagagtctgaagtcaagaagttgcagttagttgaattttgttattctgaagacacatcattgcag-aggaatagaag 13654034  T
Q  218 cctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||    
T  13654033 cctggagcaacaactatttcagaggaattagaaggcattagattattatccactgaagaacacagaaaaag 13653963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 284
Target Start/End: Complemental strand, 3087741 - 3087588
Alignment:
Q  131 tgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaa 230  Q
    |||||| ||||||||||||| ||||||||| |  |||||||| ||       |||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  3087741 tgaagttcatcagagtctgatgtcaagaagctcaagttagttaaagttggttatttcgaagacacatgattgcagaaggaatagaagcctgaagcaacaa 3087642  T
Q  231 ctatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaa 284  Q
    || |||||||||||||||||  ||||  ||||||||||||  |||| |||||||    
T  3087641 ctctttcagaggaattagaatacattgaatgcttatccactaaagagcgcagaa 3087588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 13699510 - 13699425
Alignment:
Q  183 attttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcc 268  Q
    ||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  13699510 attttgaagacacatgattgcagaaagaaaagaagtctggagcaacaactatttcagaggaataagaaggcattggatgcttatcc 13699425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 17697750 - 17697658
Alignment:
Q  195 catcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaa 287  Q
    ||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||| ||||||||||||  ||||||| ||||||||    
T  17697750 catcattgcagaaggaatagaagcctggagcaatagctaattcagaggaatttgaaggcattggatgcttatccatagaagaacacagaaaaa 17697658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 131 - 288
Target Start/End: Complemental strand, 21317595 - 21317438
Alignment:
Q  131 tgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaa 230  Q
    |||||| ||||||||| || |||||| ||| ||||||||||| ||       | ||||| ||||||| |||||||||||||||||||||| ||||||| |    
T  21317595 tgaagttcatcagagtatgtagtcaataagctgcagttagttaaagtttgttaatttgatgacacatgattgcagaaggaatagaagcctagagcaacga 21317496  T
Q  231 ctatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||| ||| |||||| |||||||| ||||||||||| | ||||| ||||| |||||    
T  21317495 ctattttagatgaattataaggcatttgatgcttatcctctgaagagcgcaggaaaag 21317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 8729017 - 8729099
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  8729017 attgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaagagcgca 8729099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 9080904 - 9080986
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  9080904 attgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaagagcgca 9080986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 315235 - 315139
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    ||||||||||||| ||||||| ||||||| || |||||||||||  ||||||||||||||||||||||||||  |||||||||||| ||||| ||||    
T  315235 tttgaagacacatgattgcaggaggaataaaaacctggagcaacggctatttcagaggaattagaaggcattgaatgcttatccactgaagagcgca 315139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 16794304 - 16794393
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||| |||||||| |||||  ||||||||||||||||||| ||||||| ||||||||||||  ||||| |||||||||||    
T  16794304 attgcagaaggaatggaagcctgaagcaatgactatttcagaggaattaggaggcattggatgcttatccattgaagagcgcagaaaaag 16794393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 11078783 - 11078695
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||| |||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||  |||| || ||||||||    
T  11078783 ttgcggaaggaatagaagcctggagcaactactcttttagaggaatcagaaggcattagatgcttatccacttaagagcgtagaaaaag 11078695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 27851837 - 27851759
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtct 97  Q
    ||||||||||||||||| |||| | | |||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  27851837 caaaggaagcttatgttacaagtctgagtctgaagacaatcagagtctgaagaccatcagaagctgactgccaaagtct 27851759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 22766552 - 22766641
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||| ||||||| |||||||  ||| |||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||||    
T  22766552 attgcagaaggaatggaagcctagagcaacggctaattcagaggaatttgaaggcattggatgcttatccactgaagagcgcaggaaaag 22766641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 16882425 - 16882337
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaa 287  Q
    |||||||||||||| |||||||| | ||||| ||||||||||||||||| |||||||| ||||||||||||| ||| | ||||| ||||    
T  16882425 attgcagaaggaatggaagcctgcaacaacagctatttcagaggaattaaaaggcattggatgcttatccactgaatagcgcaggaaaa 16882337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 27851678 - 27851602
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    |||||||||||||||||| |||||||||||||||||||||| | ||||||| |||| ||||||||||| | ||||||    
T  27851678 tgcagaaggaatagaagcatggagcaacaactatttcagagaagttagaagacattggatgcttatccgctgaagaa 27851602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 13699626 - 13699539
Alignment:
Q  18 gcaaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaaga-ccatcagaagctgactgccagagtctgacgtca 104  Q
    ||||||||||||||||||||||||| | |||||||||| |  | ||||||||||  ||||||||||||||||| ||||||||||||||    
T  13699626 gcaaaggaagcttatgttgcaagacagagtctgaagaccataaaagtctgaagattcatcagaagctgactgcgagagtctgacgtca 13699539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 19197899 - 19197969
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||| |||| |||||||    
T  19197899 attgcagaaggaatggaagcctggagcaacgactacttcagaggaatttgaaggcattggatgattatcca 19197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 20418380 - 20418286
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||| |||||| |||| ||||| ||| |||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||| | ||||| ||||    
T  20418380 tgaatacacatgattgtagaagaaatggaagtctggagcaacgactatttcagaggaattagaaggcattggatacttatcctctgaagagcgca 20418286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 16305184 - 16305272
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||||||||||| |||||  | ||||||||||||| ||||||||||| ||| ||||| |||  |||| ||||| |||||    
T  16305184 ttgcagaaggaatagaagcctgaagcaatgaatatttcagaggaaatagaaggcattggatacttatgcactaaagagcgcaggaaaag 16305272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 2903213 - 2903280
Alignment:
Q  203 cagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||||| |||  ||||||| |||||| || ||||||||||||||| |||||||||||||    
T  2903213 cagaaggaatagaagactgatgcaacaaatatttctgaagaattagaaggcattggatgcttatccac 2903280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 10851951 - 10851868
Alignment:
Q  193 cacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||||||||||||||||| |||| ||||| |||  |||||||| |||| |||||| ||||| ||||||||| ||| |||||    
T  10851951 cacatcattgcagaaggaataaaagcttggagtaacggctatttcaaaggagttagaaagcattggatgcttattcactgaaga 10851868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 11513968 - 11513897
Alignment:
Q  206 aaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    |||||||| ||| |||||| ||| ||||||| |||||||||| ||||||||  |||||||||||||||||||    
T  11513968 aaggaatataagactggagtaacgactatttaagaggaattataaggcatttcatgcttatccaccgaagaa 11513897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 14072825 - 14072746
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgc 280  Q
    |||||||||||| | ||||||||||||| | || || ||||||||| ||||||||| ||||||||||||  |||||||||    
T  14072825 tgcagaaggaatgggagcctggagcaacgaataatttagaggaatttgaaggcattggatgcttatccattgaagaacgc 14072746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 13932086 - 13932004
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatc 267  Q
    ||||||||||||   ||||||||||||| ||| |||||||  ||  |||| ||| ||||||||||||||||||||||||||||    
T  13932086 tttgaagacacaagtttgcagaaggaatggaaacctggagtgacggctatctcaaaggaattagaaggcattagatgcttatc 13932004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 14077356 - 14077454
Alignment:
Q  183 attttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||||||  ||||||||||||||||  ||||  |||||||| |||    |||||||||||||||||||| |||| ||||||||||||| ||||| ||||    
T  14077356 attttgattacacatcattgcagaaccaataagagcctggatcaatggatatttcagaggaattagaagacattggatgcttatccactgaagagcgca 14077454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 17762110 - 17762194
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||   ||| | ||||||||||||| ||||||||| | |||||  |||||||||||||||||| |||| |||||||    
T  17762110 tttgaagacacaagtttgtataaggaatagaagcttggagcaacgattattttggaggaattagaaggcatttgatgtttatcca 17762194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 19063430 - 19063514
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||   ||| | ||||||||||||| ||||||||| | |||||  |||||||||||||||||| |||| |||||||    
T  19063430 tttgaagacacaagtttgtataaggaatagaagcttggagcaacgattattttggaggaattagaaggcatttgatgtttatcca 19063514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 4243208 - 4243274
Alignment:
Q  214 gaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||| |||||||||| |||||||||||||||||| ||||||||  |||||||||||| ||||| ||||    
T  4243208 gaagtctggagcaacgactatttcagaggaatta-aaggcattgaatgcttatccactgaagagcgca 4243274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 27374912 - 27374838
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||| |||||| || ||||||| ||||||| | | ||| ||||||||||||||||||| ||||||| |||||    
T  27374912 atcattgtagaaggtatggaagcctagagcaacgagtgttttagaggaattagaaggcattggatgcttctccac 27374838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 16305039 - 16305124
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtca 104  Q
    |||||||||||| ||||||||| | | || ||||||| | ||||||||||||  |||||||| |||| ||| ||||||||| ||||    
T  16305039 caaaggaagcttgtgttgcaagtctgagtatgaagaccatcagagtctgaagttcatcagaaactgaatgctagagtctgaagtca 16305124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 12409758 - 12409797
Alignment:
Q  60 agagtctgaagaccatcagaagctgactgccagagtctga 99  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  12409758 agagtctgaagaccatcagaagatgactgtcagagtctga 12409797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 20418500 - 20418434
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctga 85  Q
    |||| ||||||| |||||||||||   ||||||||||||  |||||||||||| | |||||||||||    
T  20418500 caaaagaagcttttgttgcaagacaaagtctgaagactaagagagtctgaagagcctcagaagctga 20418434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 3087776 - 3087739
Alignment:
Q  62 agtctgaagaccatcagaagctgactgccagagtctga 99  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  3087776 agtctgaagaccatcaaaagctgactgccagagactga 3087739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 15647875 - 15647815
Alignment:
Q  210 aatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||| ||| |||||||||  ||||||| |||||||||||| ||| || |||||||||||||    
T  15647875 aataaaagactggagcaatgactatttaagaggaattagatggctttggatgcttatccac 15647815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 16794140 - 16794207
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgact 87  Q
    |||| |||||||||||||||||||   |||||||||| |  || ||||||||||||| |||||||||||    
T  16794140 caaaagaagcttatgttgcaagacaaagtctgaagacaaagagcgtctgaagaccat-agaagctgact 16794207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 24 - 281
Target Start/End: Complemental strand, 31935 - 31679
Alignment:
Q  24 gaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccat 123  Q
    |||||||||||||||||||   ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  31935 gaagcttatgttgcaagacatagtctgaagactaccagagt-tgacgaccatcagaagccgactgccagagtctgacgtcatcaagcgtcttaagaccat 31837  T
Q  124 cagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctgga 223  Q
    |||| | |||||| ||||  |||||| ||||||||||  | |||||||| ||       ||| | |||||||||||||||||||||||||||||||||||    
T  31836 cagagtctgaagttcatctaagtctgtagtcaagaagccgaagttagttaaagtttgttattgtcaagacacatcattgcagaaggaatagaagcctgga 31737  T
Q  224 gcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    ||||| ||||||| | ||||||||||||| ||| ||||||||||||| ||||| ||||    
T  31736 gcaacgactattttaaaggaattagaaggaattggatgcttatccactgaagagcgca 31679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 24398971 - 24398725
Alignment:
Q  24 gaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccat 123  Q
    |||||||||||||||||||   || |||||||||| |||||||||||||||||||||||  ||||| ||||||||| |||||||||||||| ||||||||    
T  24398971 gaagcttatgttgcaagacaaagtatgaagactactagagtctgaagaccatcagaagcccactgctagagtctgaggtcatcaagcgtctgaagaccat 24398872  T
Q  124 cagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctgga 223  Q
    |||| | |||||| ||| |||||||| ||| |||||| ||||||||||| ||       ||| | ||||||||||||||||||||| |||||||||||||    
T  24398871 cagagtctgaagttcattagagtctgtagttaagaagctgcagttagttaaagtttgttattctcaagacacatcattgcagaaggtatagaagcctgga 24398772  T
Q  224 gcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||| ||||||| | ||||||||||||||||| |||||||||||||    
T  24398771 gcaacgactattttaaaggaattagaaggcattggatgcttatccac 24398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 13145451 - 13145199
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaag 118  Q
    |||||||||||| ||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  13145451 caaaggaagcttgtgttgcaagacagagtctgaagactaacagagtttgaagaccatcagaagctgactgccagaagctgacgtcatcaagcgtctaaag 13145352  T
Q  119 accatcagaatttgaagtacatcagagtctgaag-tcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaag 217  Q
    | | ||||||  |||||| ||| |||||||||||  |  |||| ||| |||| || ||         | | |||||||||||||||||||||||||||||    
T  13145351 atcctcagaagctgaagttcattagagtctgaagaactggaagctgctgttacttaaagtttgtttctctaaagacacatcattgcagaaggaatagaag 13145252  T
Q  218 cctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||  ||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  13145251 cctgatgcaacgactatttcagatgaattagaaggcattgaatgcttatccac 13145199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 18026778 - 18026854
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  18026778 ttgcagaaggagtagaagcctggagcaacaactatttcagaggaattagaaggcattggatgcttatccactgaaga 18026854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 138 - 281
Target Start/End: Original strand, 31127292 - 31127435
Alignment:
Q  138 catcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttc 237  Q
    ||||||||| ||||||||||||  || |||||||| ||       ||||||||||||||| |||||| |||||||||||||||||| ||||   ||||||    
T  31127292 catcagagtatgaagtcaagaatctggagttagttaaagttggttattttgaagacacatgattgcaaaaggaatagaagcctggaacaacgtatatttc 31127391  T
Q  238 agaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||||||||| |||||||| |||||||| |||| ||||| ||||    
T  31127392 agaggaattataaggcattggatgcttaaccactgaagagcgca 31127435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 23231443 - 23231231
Alignment:
Q  76 cagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaa 175  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||   | ||||  |||||| ||||||||||||||| | |  ||||| |||||||| ||    
T  23231443 cagaagctgactgccagaagctgacgtcatcaagcgtctgaagattctaagaagctgaagttcatcagagtctgaagactaatagttgtagttagttaaa 23231344  T
Q  176 nnnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaag 275  Q
           ||| | |||||| ||||  | |||| ||||| ||||||| |||||    |||||||||| |||||||||||||| ||||||||||||| ||||    
T  23231343 gtttgttattctaaagacatatcaccgtagaatgaataaaagcctgaagcaattgatatttcagagaaattagaaggcattggatgcttatccacggaag 23231244  T
Q  276 aacgcagaaaaag 288  Q
    | ||||| |||||    
T  23231243 agcgcaggaaaag 23231231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 32335959 - 32335882
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||    
T  32335959 attgcagaaggaatggaagcctggagcaacgactatttcagaagaatttgaagggattagatgcttatccactgaaga 32335882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 26186003 - 26185760
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaaga-ccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaa 117  Q
    ||||||||||||||||||| |||| | |||||||||| | |||||||||||||  ||| ||||||||| ||||||||||||||||||||               
T  26186003 caaaggaagcttatgttgctagactgagtctgaagaccatcagagtctgaagattcattagaagctgattgccagagtctgacgtcatc----------- 26185915  T
Q  118 gaccatcagaatttgaagtacatcagagtctgaagtcaagaagttg-cagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaa 216  Q
          |||| |||||||| ||||||||||||||||||||||| ||  |||| |||            ||||||||||| | ||| || |||||||||||    
T  26185914 ------cagagtttgaagttcatcagagtctgaagtcaagaagctgaaagttggtt-----------atttgaagacacgtgattacaaaaggaatagaa 26185832  T
Q  217 gcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
      ||||| ||||  |||||||||| |||||||||||||||||||||||||||||  ||||  ||||||||||    
T  26185831 atctggaacaacggctatttcagatgaattagaaggcattagatgcttatccactaaagagtgcagaaaaag 26185760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 16462656 - 16462750
Alignment:
Q  194 acatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||| |||||||||||||||||||||| |||  |||  ||||||||||| ||||||||| ||||||||||||| | ||| ||||| |||||    
T  16462656 acatcattacagaaggaatagaagcctggagaaacggctaaatcagaggaatttgaaggcattggatgcttatccactggagagcgcaggaaaag 16462750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 18172044 - 18172114
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||| || ||||||| ||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  18172044 attgcagaaggtatggaagcctagagcaacgactatttcagaggaattagaagacattaaatgcttatcca 18172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 23006067 - 23006137
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    |||||| |||| || ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  23006067 attgcaaaaggtatggaagcctagaggaacgactatttcagaggaattagaaggcattagatgcttatcca 23006137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 23782299 - 23782229
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    |||||| |||| || ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  23782299 attgcaaaaggtatggaagcctagaggaacgactatttcagaggaattagaaggcattagatgcttatcca 23782229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 25930616 - 25930546
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||||||| |||| |||| |||||||||    
T  25930616 atcattgcagaaggaatagaagcctggagcaacggctaattcagaggaatttgaagtcattggatgcttat 25930546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 7812148 - 7812073
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    |||||||||||||||||| | ||||||| |||| ||||||||||||  |||||||| ||||||||| |||||||||    
T  7812148 tgcagaaggaatagaagctttgagcaacgactaattcagaggaatttaaaggcattggatgcttattcaccgaaga 7812073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 10704567 - 10704637
Alignment:
Q  206 aaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||||||||||| ||||||| ||||||| | |||||||||||| ||||  ||||||||||||||||||    
T  10704567 aaggaatagaagcctagagcaacgactattttaaaggaattagaagacattgaatgcttatccaccgaaga 10704637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 21035134 - 21035045
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||| ||||| ||||||||| |||| |||| ||||||| ||| ||||| ||||||||| |||  |||||||||| |||||    
T  21035134 attgcagaaggaatggaagcttggagcaacgactaattcataggaatttgaaagcattggatgcttattcactaaagaacgcaggaaaag 21035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 25596018 - 25595953
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgctta 265  Q
    ||||| |||||||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  25596018 ttgcataaggaatagaagtctggagcaacgactatttcaaaggaattagaatgcatttgatgctta 25595953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 24728568 - 24728643
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    |||||||||||| ||| ||| | ||||   |||||||||||||||||||||||||| ||||||||||||| |||||    
T  24728568 tgcagaaggaatggaaacctagtgcaatggctatttcagaggaattagaaggcattggatgcttatccactgaaga 24728643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 17445665 - 17445726
Alignment:
Q  195 catcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcatt 256  Q
    |||||||| |||||||||   ||||||||||||| |||||||||||||||||||||| ||||    
T  17445665 catcattggagaaggaatgagagcctggagcaacgactatttcagaggaattagaagacatt 17445726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 12348237 - 12348165
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcc 268  Q
    ||||||||| ||||||||||||||||||||||   ||| |||| ||||||| |||| |||| |||||||||||    
T  12348237 atcattgcaaaaggaatagaagcctggagcaatggctaattcataggaatttgaagtcattggatgcttatcc 12348165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 10704405 - 10704472
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgac 86  Q
    ||||||||||| ||||| |||||| | |||||||||| |  ||||||||||||||||||||| |||||    
T  10704405 caaaggaagctaatgttccaagacagagtctgaagacaaagagagtctgaagaccatcagaaactgac 10704472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 30451548 - 30451635
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||| ||||||| |||||||| || |||   ||||||| || |||| ||||||||| ||||||||||||| ||||| |||||||||||    
T  30451548 tgcataaggaatggaagcctgaagtaacggttatttcatagaaatttgaaggcattggatgcttatccactgaagagcgcagaaaaag 30451635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 31127208 - 31127287
Alignment:
Q  21 aaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaaga-ccatcagaagctgactgccagagtctga 99  Q
    ||||||||||||||||||||   | |||||||||| | |||||||||||||  ||||||||| ||||| |||||||||||    
T  31127208 aaggaagcttatgttgcaagtttgagtctgaagaccatcagagtctgaagattcatcagaagatgactaccagagtctga 31127287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 19875972 - 19875901
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||||  |||| |||||| ||   ||||||||||||||||| |||||| | |||||||||||||    
T  19875972 attgcagaaggaacggaagtctggagtaatggctatttcagaggaattacaaggcaatggatgcttatccac 19875901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 17867661 - 17867619
Alignment:
Q  240 aggaattagaaggcattagatgcttatccaccgaagaacgcag 282  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||    
T  17867661 aggaattagaaggcattggatgcttatccactgaagagcgcag 17867619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 17877444 - 17877402
Alignment:
Q  240 aggaattagaaggcattagatgcttatccaccgaagaacgcag 282  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||    
T  17877444 aggaattagaaggcattggatgcttatccactgaagagcgcag 17877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 20462208 - 20462136
Alignment:
Q  23 ggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtct 97  Q
    ||||||||| |||||||| | | |||||||||| | || ||||||||||||||||||||||||||| || |||||    
T  20462208 ggaagctta-gttgcaagtctgagtctgaagac-atcaaagtctgaagaccatcagaagctgactgtcaaagtct 20462136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 23298089 - 23298019
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||||||||||||||||| ||| |||||||||   |||||||| ||||||| |||| |||| ||| |||||    
T  23298089 atcattgcagaaggaataaaagtctggagcaatggctatttcataggaattggaagacatttgattcttat 23298019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 15477701 - 15477738
Alignment:
Q  62 agtctgaagaccatcagaagctgactgccagagtctga 99  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  15477701 agtctgaagaccatcataagctgactgtcagagtctga 15477738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 9192775 - 9192691
Alignment:
Q  46 gtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaag-accatcagaa 128  Q
    |||||||||| |  || ||||||||||||||||||||||  | |||||  |||||||||||| || |||||||| ||||||||||    
T  9192775 gtctgaagacaaagagcgtctgaagaccatcagaagctgtgtaccagaagctgacgtcatcagagagtctaaagaaccatcagaa 9192691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 60 - 265
Target Start/End: Original strand, 18516972 - 18517179
Alignment:
Q  60 agagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaa-gcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaaga 158  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||| | |||| |||| |||||||| ||||||| ||||||||||||||| |  ||    
T  18516972 agagtctgaagaccatcagaagctggctgccagaagctgacgtcatcaaagagtctgaagatcatcagaagttgaagttcatcagagtctgaagactgga 18517071  T
Q  159 agttgcagttagttgaannnnnnn-attttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcatta 257  Q
    || ||||||||||| ||        ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||     
T  18517072 agctgcagttagttaaagtttttttattctgaagacacatcattacagaaggaatagaagcctggagcaacgactatttcaaaggaattagaaggcattg 18517171  T
Q  258 gatgctta 265  Q
    ||||||||    
T  18517172 gatgctta 18517179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 26279837 - 26280072
Alignment:
Q  20 aaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaaga 119  Q
    ||||||||||||||||||||||  |||| |||||||| |||||||||| ||||||| ||||||||||              |||||||||||||| ||||    
T  26279837 aaaggaagcttatgttgcaagagagggtatgaagactgccagagtctggagaccataagaagctgac--------------gtcatcaagcgtctgaaga 26279922  T
Q  120 ccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcc 219  Q
     ||||||||  |||||| ||||||||||||||| | ||||| | ||||||||| ||       ||||||||||||||||| || ||||||||||||||||    
T  26279923 tcatcagaagctgaagttcatcagagtctgaagactagaagctacagttagttaaattttgttattttgaagacacatcactgtagaaggaatagaagcc 26280022  T
Q  220 tggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||| ||||||||||| |||||||||| |||| ||||||||||||    
T  26280023 tggagcaacgactatttcagatgaattagaagtcattggatgcttatcca 26280072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 23054510 - 23054415
Alignment:
Q  193 cacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||  ||||| ||||| |||||    
T  23054510 cacatcattgcagaaggaatagaagcctggagcaacgactatttcagagaaattagaaggcattggatgtttatccaatgaagagcgcaggaaaag 23054415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 276
Target Start/End: Original strand, 18129859 - 18130039
Alignment:
Q  96 ctgacgtcatca-agcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagaca 194  Q
    |||||||||||| || |||| |||| | ||||||  |||||| |||||||||||||||||  |||| || |||||||| ||       ||| ||||||||    
T  18129859 ctgacgtcatcagagagtctgaagagcctcagaagctgaagttcatcagagtctgaagtctggaagctgaagttagttaaaagttgttattctgaagaca 18129958  T
Q  195 catcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    | ||||||||||||||||| |||||||||| ||   |||||||||||||||||||||| ||| ||||||||||||| |||||    
T  18129959 cgtcattgcagaaggaataaaagcctggagtaagg-ctatttcagaggaattagaaggtattggatgcttatccactgaaga 18130039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 21683122 - 21683225
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaa 284  Q
    ||||||||||||  ||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||| ||||||||||||  ||||| ||||| |    
T  21683122 tttgaagacacaagattgcagaaggaatagaagtctgaagcaacgactatttcaaaggaattagaaggcattggatgcttatccagtgaagagcgcagga 21683221  T
Q  285 aaag 288  Q
    ||||    
T  21683222 aaag 21683225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 9347070 - 9346820
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaa 117  Q
    |||||||||||| ||||||||||| | |||||||| | |  || || |||||||||||||||||||||| | |||  |||||||| ||| || |||| ||    
T  9347070 caaaggaagcttgtgttgcaagacagagtctgaagccaaagagcgtatgaagaccatcagaagctgactactagaagctgacgtcgtcagagagtctgaa 9346971  T
Q  118 gaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaag 217  Q
    || | || |||  |||||| || |||||||||||| |  |||| || | |||||| ||       ||| ||||  || ||||||||||||| ||| ||||    
T  9346970 gagcctcggaagctgaagttcaacagagtctgaagactggaagctggacttagttaaaagttgttattctgaattcatatcattgcagaagaaatggaag 9346871  T
Q  218 cctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||| ||||||||| |  |||||||||||||| |||||||||||||    
T  9346870 cctggagcaacgactatttcaaa--aattagaaggcattggatgcttatccac 9346820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 16478658 - 16478739
Alignment:
Q  186 ttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatc 267  Q
    |||||||||||  |||||||||| |||| || ||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  16478658 ttgaagacacaagattgcagaagaaatataaacctggagcaacgactatttcagagaaattagaaggcattggatgcttatc 16478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 16870104 - 16870013
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaa 287  Q
    |||||||||||| ||||  |||||||||||||   |||||||||||||||||||||||||| |||||||||||||  |||| ||||| ||||    
T  16870104 atcattgcagaatgaatgaaagcctggagcaattgctatttcagaggaattagaaggcattggatgcttatccactaaagagcgcaggaaaa 16870013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 2819274 - 2819336
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  2819274 agaatgaatagaagactggagcaacggctatttcagaggaattagaaggcattagatgcttat 2819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 20909548 - 20909478
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||| || |||| ||||||||||||||    
T  20909548 atcattgtagaaggaatagaagcctggagcaacgacgatttcagaggatttggaagacattagatgcttat 20909478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 26703770 - 26703604
Alignment:
Q  121 catcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcct 220  Q
    ||||||| | |||||| ||||||||| ||||||||||||| || |||||||| ||       |||  |||||||||   |||||||||||| ||||||||    
T  26703770 catcagagtctgaagttcatcagagtttgaagtcaagaagctggagttagttaaagttggttattg-gaagacacaagtttgcagaaggaacagaagcct 26703672  T
Q  221 ggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    ||| | |   ||||||||||| ||||||||| ||||  |||||||||||| ||||| |||||||||||    
T  26703671 ggaacgatggctatttcagagaaattagaagacattgtatgcttatccactgaagagcgcagaaaaag 26703604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 17018719 - 17018650
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||| ||||| |||||||||    
T  17018719 atcattgcagaag-aatagaagcttggagcaacaactacttcagaggaattggaaagcattggatgcttat 17018650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 31359446 - 31359378
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||||||| |||  ||||||| |||||| || |||||||||||| || ||||||||||||    
T  31359446 tgcagaaggaatagaagactgatgcaacaaatatttctgaagaattagaaggctttggatgcttatcca 31359378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 20109897 - 20109947
Alignment:
Q  206 aaggaatagaagcctggagcaacaactatttcagaggaattagaaggcatt 256  Q
    ||||||||||||| ||||||||| ||||||| | |||||||||||||||||    
T  20109897 aaggaatagaagcatggagcaacgactattttaaaggaattagaaggcatt 20109947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 24227929 - 24227973
Alignment:
Q  202 gcagaaggaatagaagcctggagcaacaactatttcagaggaatt 246  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||    
T  24227929 gcagaaggaattgaagcctggagcaacgactaattcagaggaatt 24227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 31359563 - 31359523
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactgccagagtctga 99  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  31359563 cagagtctgaagaccattagaagctgactgtcagagtctga 31359523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 8699101 - 8699056
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactgccagagtctgacgtca 104  Q
    |||||||| ||||||||| ||||||||||| |||||||||| ||||    
T  8699101 cagagtctaaagaccatccgaagctgactgtcagagtctgaagtca 8699056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 1090485 - 1090557
Alignment:
Q  199 attgcagaaggaatagaagcctggag-caacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||||| |||||| |||| ||||  ||| ||||||  |||| ||||||||| |||||||||||||    
T  1090485 attgcagaaggaatggaagcccggaggcaacggctaattcagataaatttgaaggcattggatgcttatccac 1090557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 8698980 - 8698912
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||| ||  || |||||| |||||||||| |||||  ||||||| || ||||||||||||    
T  8698980 tgcagaaggaataaaacacttgagcaataactatttcaaaggaagcagaaggctttggatgcttatcca 8698912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 3822 - 4084
Alignment:
Q  26 agcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatca 125  Q
    |||||||||||||||||    |||||| || || ||||||| |||||||||||||||||||||| | |  |||||||||| |||||||| ||||||||||    
T  3822 agcttatgttgcaagacataatctgaaaaccactagagtctaaagaccatcagaagctgactgcaaaaagctgacgtcattaagcgtctgaagaccatca 3921  T
Q  126 gaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagc 225  Q
     | | |||||| |||||||||| |||||||||||||||||||||||| ||       ||| ||||||||||  |||||||||||||||||||  |||||     
T  3922 tagtgtgaagttcatcagagtcggaagtcaagaagttgcagttagttaaagttagttattatgaagacacaagattgcagaaggaatagaagtttggagg 4021  T
Q  226 aacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||  |||||||| ||||||||||||| ||| |||| ||||||   ||||| |||||||||||    
T  4022 aacggctatttcataggaattagaaggaatttgatgtttatcctttgaagagcgcagaaaaag 4084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 31588857 - 31589109
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaag 118  Q
    |||| ||||||||||||||||||| | |||| ||||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||  ||| |||    
T  31588857 caaaagaagcttatgttgcaagacagagtctaaagactatcagagtctgaagaccatcaggagctgactgccagaagctgacgtcatcaagtatctgaag 31588956  T
Q  119 accatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagc 218  Q
    | |||||||                 |||||||| | |||||||||||||| || ||       ||| ||||||||||||||||||||||||||||||||    
T  31588957 atcatcaga-----------------gtctgaagactagaagttgcagttaattaaagtttgttattctgaagacacatcattgcagaaggaatagaagc 31589039  T
Q  219 ctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    ||||||||||| ||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||    
T  31589040 ctggagcaacagctaattcagaggaattaaaaggcattggatgcgtatccactgaagaacgcaggaaaag 31589109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 20969511 - 20969260
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaag 118  Q
    |||||||| ||| ||||| |||||   |||| ||||| ||||||| ||||||||||| |||||||||||||| ||   |||||||||||||||||| |||    
T  20969511 caaaggaaacttgtgttgtaagacatagtcttaagaccaccagaggctgaagaccattagaagctgactgcctgaagttgacgtcatcaagcgtctgaag 20969412  T
Q  119 accatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagc 218  Q
    | | ||||||  |||||| | ||| ||||||||| |  |||| || |||||||| ||       ||||||||||||||||| || |||||||||||||||    
T  20969411 atcctcagaagctgaagttcttcaaagtctgaagactggaagctgtagttagttaaagcttgttattttgaagacacatcactgtagaaggaatagaagc 20969312  T
Q  219 ctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||  | |||| ||||||| ||||||||||||| ||||| |||||||||||||    
T  20969311 ctacatcaacgactatttaagaggaattagaaagcattggatgcttatccac 20969260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 27057572 - 27057360
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaaga 158  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||                 |||||||| ||||     
T  27057572 cagagtctgaagaccatcagaagcaaactgccagagtctgacgtcatcaagagtctgaagaccatcaga-----------------gtctgaagccaagg 27057490  T
Q  159 agttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattag 258  Q
    || || |||||||| ||       ||| ||||||||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||||||||||| |    
T  27057489 agatgtagttagttaaagtttgttattctgaagacacatcattgcagaaggaataaaagactagagcaatgactatttcagaggaattagaaggcattgg 27057390  T
Q  259 atgcttatccaccgaagaacgcagaaaaag 288  Q
    |||  ||||||| ||||| |||| ||||||    
T  27057389 atgactatccactgaagagcgcaaaaaaag 27057360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 26119816 - 26119914
Alignment:
Q  183 attttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    ||||||||  || ||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  26119816 attttgaatgcatatcattgcaaaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaagagcgca 26119914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 13692564 - 13692465
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    |||||| ||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||| ||||  |||||||||||| ||||| | |||||||    
T  13692564 tgaagatacatcattgcagaaggaatagaagcctcgagcaatgactattttagaggaattagaagacattgaatgcttatccacagaagagcacagaaaa 13692465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 39798877 - 39798976
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    ||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||| |||||||| ||||| ||||||||| |||  |||| |||||||||    
T  39798877 tgaagacacataattgcagaaggaataaaaggctggagcaacgactatttcagagaaattagaaagcattggatgcttattcacttaagagcgcagaaaa 39798976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 17262742 - 17262823
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcag 282  Q
    |||| ||||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||||||||| ||||| |||||    
T  17262742 tgcaaaaggaatagaagcctggagcaatgactatttcagaggaatgagaaggcattggatgcttatccactgaagagcgcag 17262823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 2152909 - 2152993
Alignment:
Q  195 catcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacg 279  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||  |||||||| ||| ||||||||    
T  2152909 catcatagcagaaggaatagaagcctggagcaacaactatttcagaagaattggaagacattgaatgcttattcacagaagaacg 2152993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 20237391 - 20237459
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcc 268  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  20237391 ttgcaaaaggaatagaagccttgagcaacgactatttcagaggaattagaaggcatttgatgcttatcc 20237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 23589847 - 23589776
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  23589847 attgcagaaggaatggatgcctggagcaacgactatttcagaggaattagaaggcattggatggttatccac 23589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 27276153 - 27276229
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    |||||||||||||||||| || | |||||| |||||||||||||||||||||||||  |||||||||||| ||||||    
T  27276153 tgcagaaggaatagaagcgtgaaacaacaattatttcagaggaattagaaggcattgaatgcttatccactgaagaa 27276229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 39798770 - 39798838
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatcaga 127  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  39798770 cagagtttgaagaccttcagaagctgactgccagagtctgacgtcatcaagagtatgaagaccatcaga 39798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 34638581 - 34638495
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    ||||| ||||||| |||||||||||||||  ||| |||||||||||| ||||||||| |||| |||||||| ||||| |||||||||    
T  34638581 ttgcataaggaatggaagcctggagcaacggctaattcagaggaatttgaaggcattggatgtttatccactgaagagcgcagaaaa 34638495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 13692701 - 13692634
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgac 86  Q
    |||||||| ||||||||||||||| | ||||||||||||  |||||||||||||||||||||| ||||    
T  13692701 caaaggaaacttatgttgcaagacagagtctgaagactagtagagtctgaagaccatcagaagatgac 13692634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 22585992 - 22586079
Alignment:
Q  183 attttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||||  |  ||||||||||||||||||||||||||| ||||||| ||| || | ||||||||||  ||||||||||||    
T  22585992 attttgaagacacaagacagcagaaggaatagaagcctggagcaacgactattttagaagactaagaaggcattgaatgcttatccac 22586079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 34637666 - 34637579
Alignment:
Q  183 attttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||| |||||||||   ||||||||||||||||| ||| |||| || ||||||| |||||||||| |||||||| |||||||||||||    
T  34637666 atttggaagacacaagtttgcagaaggaatagaatcctagagcgacgactattttagaggaattaaaaggcattggatgcttatccac 34637579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 20237263 - 20237335
Alignment:
Q  32 tgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtca 104  Q
    ||||||||| | | |||||||||| | ||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  20237263 tgttgcaagtctgagtctgaagaccatcagagtctgaagaacatcagaagctgactgcgagagtctgaagtca 20237335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 20567937 - 20567869
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatc 267  Q
    ||||||||||||||  || ||||||||||| |||| |||||||||||| ||||||||| ||||||||||    
T  20567937 attgcagaaggaatgcaatcctggagcaacgactacttcagaggaatttgaaggcattggatgcttatc 20567869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 16607650 - 16607581
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||||||||| ||||||||| || ||||||    
T  16607650 atcattgcagaag-aatagaagcctggagcaacggctaattcagaggaatttgaaggcattggaagcttat 16607581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 18361537 - 18361676
Alignment:
Q  131 tgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaa 230  Q
    |||||| ||||||||||||||||||||||| || ||||||||  |       || |||||||||||| |||| ||||||||||||||| || ||||||||    
T  18361537 tgaagttcatcagagtctgaagtcaagaagctggagttagttacagttggttatcttgaagacacatgattgtagaaggaatagaagcttgaagcaacaa 18361636  T
Q  231 ctatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18361637 ctatttcagaggaattagaaggcattagatgcttatccac 18361676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 9064017 - 9064287
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaa 117  Q
    |||| ||||||||||||||||||| | || ||||||| |  ||| ||| |||||||||||||||||| ||| |||  |||| ||||||| || |||| ||    
T  9064017 caaaagaagcttatgttgcaagacagagtatgaagacaaagagattctaaagaccatcagaagctgaatgcaagaagctgatgtcatcagagagtctgaa 9064116  T
Q  118 gaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaag 217  Q
    || | | ||||  || ||| ||||| ||||||||| |   ||| || |||||||| ||       ||| ||||  || ||||||| ||||||||| ||||    
T  9064117 gagccttagaagctggagttcatcatagtctgaagactgaaagctggagttagttaaaagttgttattctgaattcatatcattgtagaaggaatggaag 9064216  T
Q  218 cctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    ||||||||||| |||||||  ||||||||||||||||||  |||||||||||| ||||| |||||||||||    
T  9064217 cctggagcaacgactatttatgaggaattagaaggcattgaatgcttatccactgaagagcgcagaaaaag 9064287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 13172369 - 13172446
Alignment:
Q  193 cacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||| | ||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||    
T  13172369 cacatcattgtaaaaggagtagaagcctggagcaacgactatttcagagtaattagaaggcattggatgcttatccac 13172446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 14114166 - 14114101
Alignment:
Q  205 gaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  14114166 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccac 14114101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 14423816 - 14423751
Alignment:
Q  205 gaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  14423816 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccac 14423751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 276
Target Start/End: Original strand, 16307617 - 16307828
Alignment:
Q  66 tgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgc 164  Q
    |||||||||||||||| ||||| ||| |   ||||||||||| || ||||||||| | ||||||  || ||| ||||||||||||||  |  |||| ||     
T  16307617 tgaagaccatcagaagatgactaccaaaagttgacgtcatcatagagtctaaagaacctcagaagctggagttcatcagagtctgaaaactggaagctgg 16307716  T
Q  165 agttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgctt 264  Q
    |||||||| ||       ||| ||||   | ||||||  ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  16307717 agttagttaaaagttgttattctgaatgtatatcattatagaaggaatggaagcctggagcaacgactattttagatgaattagaaggcattggatgctt 16307816  T
Q  265 atccaccgaaga 276  Q
    |||||| |||||    
T  16307817 atccactgaaga 16307828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 16105018 - 16105087
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    |||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||    
T  16105018 ttgcagaaggaatataagcctggagcaacgactattttataggaattagaaggcattggatgcttatcca 16105087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 5035510 - 5035432
Alignment:
Q  198 cattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||  |||||||||||||| ||||||||||||| |||||    
T  5035510 cattgcagaaggaataaaagcctggaacaacgcctatttcagataaattagaaggcattggatgcttatccactgaaga 5035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 18047846 - 18047940
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgca 281  Q
    |||||||||||||||| |||||||||| |||||| ||||||    |||||||||||||||||||||||||  |||||||||| | ||||| ||||    
T  18047846 tgaagacacatcattgtagaaggaataaaagcctagagcaatggatatttcagaggaattagaaggcattgaatgcttatcctctgaagagcgca 18047940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 15871121 - 15871190
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||||||| |||||||||||| | |||| || ||||||||||||||| |||||||||||||    
T  15871121 tgcagaaggaatagaagactggagcaacaaatttttctgaagaattagaaggcattggatgcttatccac 15871190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 16412132 - 16412061
Alignment:
Q  196 atcattgcagaaggaata-gaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| ||||  |||||||| |||||||||    
T  16412132 atcattgcagaaggaataagaagcctggagcaacgactatttcagagaaattgaaaggcattggatgcttat 16412061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 7487926 - 7488015
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    ||||||| |||||||||| || ||||||||||  |||| ||||||||| || ||||||||| ||||||||||||| ||||| |||||||||    
T  7487926 atcattgtagaaggaataaaa-cctggagcaatgactaattcagaggattttgaaggcattggatgcttatccactgaagagcgcagaaaa 7488015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 11572261 - 11572347
Alignment:
Q  184 ttttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||||    ||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||  ||||||| ||||    
T  11572261 ttttgaagacacaaatgtgcagaaggaatagaagactgaagcaacagatatttcagaggaattagaaggcattgtatgcttaaccac 11572347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 16472808 - 16472744
Alignment:
Q  206 aaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||| |||||| ||| ||| ||||| ||| ||||||||||||| |||||||||||||    
T  16472808 aaggaatagaagactggagtaacgactttttcaaaggcattagaaggcattggatgcttatccac 16472744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 2501095 - 2501161
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||||| |||||||||| | |||||| || |||||||||||||||  || |||||||||    
T  2501095 agaaggaatagaagactggagcaacgaatatttctgaagaattagaaggcattgaattcttatccac 2501161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 16412854 - 16412812
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaatt 246  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  16412854 agaaggaatagaagccaggagcaacgactatttcagaggaatt 16412812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 18047743 - 18047807
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagct 83  Q
    |||||||||||| |||||||||||   ||||||| | | ||||||| ||||||||||||||||||    
T  18047743 caaaggaagcttgtgttgcaagacatagtctgaaaattgccagagtttgaagaccatcagaagct 18047807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 23126067 - 23125999
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||||||| ||| || ||    ||||| ||||||||| ||||| ||||||||||||||||    
T  23126067 tgcagaaggaatagaagactgaagtaattgttatttgagaggaattggaaggtattagatgcttatcca 23125999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 14356932 - 14357201
Alignment:
Q  20 aaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaag 118  Q
    ||||||||||||||||||||||| | ||||||| ||||  ||||| |||||| ||| |||||||||||||||||   ||||||||||| ||  ||| |||    
T  14356932 aaaggaagcttatgttgcaagacagagtctgaaaactaagagagtgtgaagatcattagaagctgactgccagaagttgacgtcatcagagaatctgaag 14357031  T
Q  119 accatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagc 218  Q
    | | ||| ||  |||||| || |||||||| |||    |||  || |||||||| ||       ||| |||||||||||||||||| |||||||||||||    
T  14357032 agcctcaaaagctgaagttcaacagagtctaaagattggaaactgaagttagttaaaagttgttattctgaagacacatcattgcaaaaggaatagaagc 14357131  T
Q  219 ctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||   |||||||||||||||||||||||||| |||| ||||||||  |||| ||||| |||||    
T  14357132 ctggagcaatgtctatttcagaggaattagaaggcattggatggttatccactaaagagcgcaggaaaag 14357201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 2651989 - 2651853
Alignment:
Q  140 tcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcag 239  Q
    ||||||||||||| | ||||||||||||||||| ||       ||| |||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||    
T  2651989 tcagagtctgaagactagaagttgcagttagttaaagtttgttattctgaagacacatcattgcaaaaggaatagaagcttggagtaacgactatttcag 2651890  T
Q  240 aggaattagaaggcattagatgcttatccaccgaaga 276  Q
    |||||||||||||||||  |||||||||||| |||||    
T  2651889 aggaattagaaggcattgaatgcttatccactgaaga 2651853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 18774191 - 18774090
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||||||||||||||||  |||| ||||| |||    
T  18774191 tgaagaaacatcattgcagaaggaatagatgcctagagcaacaactatttaggaggaattagaaggcattagatgcttatccacttaagagcgcaggaaa 18774092  T
Q  287 ag 288  Q
    ||    
T  18774091 ag 18774090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 20570968 - 20571069
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    ||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||    
T  20570968 tgaagtcacataattgtagaaggaatagaagtctggagcaacgactatttcagaggaattagaaggcatttgatgcttatccactgaagagcacagaaaa 20571067  T
Q  287 ag 288  Q
    ||    
T  20571068 ag 20571069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 287
Target Start/End: Complemental strand, 13028066 - 13027822
Alignment:
Q  46 gtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtct--aaagaccatcagaatttgaagtacatca 142  Q
    |||||||||| |  || |||| |||||||||||||| || || ||| |  |||||||||||| || ||||  ||  ||||||||||  || ||| |||||    
T  13028066 gtctgaagacaaagagcgtctaaagaccatcagaagttgtctaccacaagctgacgtcatcagagagtctggaagaaccatcagaagctggagttcatca 13027967  T
Q  143 gagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagagg 242  Q
    |||||||||| |  |||| || |||||||| ||       ||| ||||  || ||||||||||||||||| |||||||||||||||  ||||||||||||    
T  13027966 gagtctgaagacgggaagctgaagttagttaaatgtttttattctgaatgcatatcattgcagaaggaatggaagcctggagcaacggctatttcagagg 13027867  T
Q  243 aattagaaggcattagatgcttatccaccgaagaacgcagaaaaa 287  Q
    |||||||||||||| ||||||||||||| ||||| ||||| ||||    
T  13027866 aattagaaggcattggatgcttatccactgaagagcgcaggaaaa 13027822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2652062 - 2651979
Alignment:
Q  16 tagcaaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctga 99  Q
    ||||||||||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2652062 tagcaaaggaagcttatgttgcaagaaatagtttgaagactaccagagtctgaagaccatcagaagctgactgtcagagtctga 2651979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 14902280 - 14902387
Alignment:
Q  20 aaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaaga 119  Q
    |||||||| |||||||||||||| | || |||||||| ||| ||  |||||| | | ||||| ||||||| |||||| ||||||||||||||||| ||||    
T  14902280 aaaggaaggttatgttgcaagacagagtttgaagactgccaaagattgaagaactttagaagatgactgctagagtccgacgtcatcaagcgtctgaaga 14902379  T
Q  120 ccatcaga 127  Q
    ||||||||    
T  14902380 ccatcaga 14902387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 14902432 - 14902495
Alignment:
Q  191 gacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggca 254  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  14902432 gacatatcattgcagaaggaatagaagcttggagcaacgactattttagaggaattagaaggca 14902495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 17812261 - 17812344
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcc 268  Q
    ||||||||||||   ||||||||| ||||||||  |||||||||  |||||||||||||||||||||||||| |||||||||||    
T  17812261 tttgaagacacaaatttgcagaagaaatagaagtttggagcaacggctatttcagaggaattagaaggcattggatgcttatcc 17812344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 18776299 - 18776225
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccaga 93  Q
    |||||||||||||||||||||||| | ||||||||||||  ||||| |||||||||||||||| ||||| |||||    
T  18776299 caaaggaagcttatgttgcaagacagagtctgaagactaagagagtttgaagaccatcagaaggtgacttccaga 18776225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 10249949 - 10249877
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcc 268  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||| |||| |||| |||||||||||    
T  10249949 atcattgcagaaggaatagaagtctagagcaacaactaattaagaggaatttgaagtcattggatgcttatcc 10249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 18394665 - 18394590
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaag 275  Q
    ||||| |||||||||||| |||||||||| || ||||||||||||||| |||||||| || |||||||||| ||||    
T  18394665 ttgcataaggaatagaagtctggagcaacgaccatttcagaggaattataaggcatttgaggcttatccactgaag 18394590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 16324494 - 16324580
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcag 282  Q
    ||||||| ||||||| | |||||||| | |||| |||||||||||||||||||||||||||  |||||||||||  ||||| |||||    
T  16324494 atcattgtagaaggatttgaagcctgaaacaacgactatttcagaggaattagaaggcattgtatgcttatccattgaagagcgcag 16324580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 18394823 - 18394738
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtca 104  Q
    ||||||||||||||||||||||   | |  ||||||| |  ||||||||||||||||||||||||||||  |||||||||| ||||    
T  18394823 caaaggaagcttatgttgcaagtttgagcttgaagacaattagagtctgaagaccatcagaagctgactctcagagtctgaagtca 18394738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 20577431 - 20577346
Alignment:
Q  184 ttttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    |||||||||||||    |||||||| |||||||||||| |||||   ||||||||||| |||||||||||||| ||| ||||||||    
T  20577431 ttttgaagacacaagtctgcagaagaaatagaagcctgaagcaatggctatttcagagaaattagaaggcattggattcttatcca 20577346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 17526389 - 17526457
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||||||| |||  | ||||| |||||  || ||||||||||||||| ||||||||||||    
T  17526389 tgcagaaggaatagaagactgatggaacaaatatttttgaagaattagaaggcattggatgcttatcca 17526457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 4472 - 4319
Alignment:
Q  133 aagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaact 232  Q
    |||| ||||||||||||||||||||||| || |||||||| ||       |||| ||| |||||  ||| ||||||||||| |||||||||||||| |||    
T  4472 aagttcatcagagtctgaagtcaagaagctggagttagttaaagttggttattt-gaaaacacaagatttcagaaggaataaaagcctggagcaacgact 4374  T
Q  233 atttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaa 287  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  4373 atttcagaggaattagaaggcatttgatgcttatccactgaagaacgcaggaaaa 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 4569 - 4479
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaaga-ccatcagaagctgactgccagagtctgacgtcatcaa 108  Q
    |||||||||||||||||||||| | |  ||||||||| | |||| | ||||||  ||||||||| ||||||||| ||||| | ||||||||    
T  4569 caaaggaagcttatgttgcaagtctgaatctgaagaccatcagattatgaagattcatcagaagttgactgccatagtctaatgtcatcaa 4479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 12194167 - 12193945
Alignment:
Q  65 ctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgc 164  Q
    |||| |||||||||||||||||||||| |  |||||||||||| || | | |||| | ||||||  |||||| ||||||||| ||||| |  |||  | |    
T  12194167 ctgaggaccatcagaagctgactgccaaaagctgacgtcatcaggcatatgaagatcctcagaagctgaagttcatcagagtttgaagactggaaactac 12194068  T
Q  165 agttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgctt 264  Q
    |||||||| ||       ||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||    
T  12194067 agttagttaaagtttgttattctgaagacacatcattgtagagggaatagaagcctggaacaacaactatttcagaagaattggaaggcattggatgctt 12193968  T
Q  265 atccaccgaagaacgcagaaaaa 287  Q
     ||||  ||||| ||||| ||||    
T  12193967 gtccattgaagagcgcaggaaaa 12193945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 12438595 - 12438373
Alignment:
Q  65 ctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgc 164  Q
    |||| |||||||||||||||||||||| |  |||||||||||| || | | |||| | ||||||  |||||| ||||||||| ||||| |  |||  | |    
T  12438595 ctgaggaccatcagaagctgactgccaaaagctgacgtcatcaggcatatgaagatcctcagaagctgaagttcatcagagtttgaagactggaaactac 12438496  T
Q  165 agttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgctt 264  Q
    |||||||| ||       ||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||    
T  12438495 agttagttaaagtttgttattctgaagacacatcattgtagagggaatagaagcctggaacaacaactatttcagaagaattggaaggcattggatgctt 12438396  T
Q  265 atccaccgaagaacgcagaaaaa 287  Q
     ||||  ||||| ||||| ||||    
T  12438395 gtccattgaagagcgcaggaaaa 12438373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 270
Target Start/End: Original strand, 17916707 - 17916915
Alignment:
Q  63 gtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaagt 161  Q
    ||||||||||||||||||| || || |||||  |||||||||||| || ||||||||||| ||||||  || ||| |||||||||||||||    |||||    
T  17916707 gtctgaagaccatcagaagttgtctaccagaagctgacgtcatcagagagtctaaagaccgtcagaagctggagttcatcagagtctgaagattggaagt 17916806  T
Q  162 tgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatg 261  Q
    || | |||||| ||       ||| | ||   | ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| || |    
T  17916807 tggaattagttaaaagttgttattcttaatgtaaatcattgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggaag 17916906  T
Q  262 cttatccac 270  Q
    |||||||||    
T  17916907 cttatccac 17916915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 18558157 - 18558074
Alignment:
Q  193 cacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||||||||||| |||| |||||||| |||||    
T  18558157 cacatcattgcagaaggaatataagcctagagcaacgactatatcagagaaattagaaggcattggatgtttatccactgaaga 18558074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 22710900 - 22710804
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagac-catcagaagctgactgccagagtctgacgtcatcaagcgtct 114  Q
    ||||||||||||||  |||||| | | |||||||||| | |||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||    
T  22710900 caaaggaagcttataatgcaagtctgagtctgaagaccatcagagtctgaagattcatcagaagctgactaccagagtctgacgtcatcaagagtct 22710804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 1208519 - 1208603
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtca 104  Q
    |||||||||||||||||||||| | | |||||||||    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  1208519 caaaggaagcttatgttgcaagtctgagtctgaaga-agtcagagtctgaagaacatcagaagctgactgccagagtctgaagtca 1208603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 19505448 - 19505533
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||   ||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||  ||||||| ||||    
T  19505448 tttgaagacacaagtttgcagaaggaatagaatcctcgagcaacggctatttcagaggaattagaaggcattgaatgcttacccac 19505533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 12541759 - 12541703
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcatt 256  Q
    ||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  12541759 ttgcagaagaaatagaagcctggagaaacgactattttagaggaattagaaggcatt 12541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 1208632 - 1208709
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagc-aacaactatttcagaggaattagaaggcattagatg 261  Q
    ||||||||||||   ||| ||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||    
T  1208632 tttgaagacacaagtttgtagaaggaatagaagcctggggccaacgactatttcagaggaatttgaaggcattggatg 1208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 19505300 - 19505385
Alignment:
Q  20 aaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaaga-ccatcagaagctgactgccagagtctgacgtca 104  Q
    ||||||| ||||||||||||| | | |||||||||| | |||||| ||||||  ||||||||||||||||||| ||||||| ||||    
T  19505300 aaaggaaacttatgttgcaagtctgagtctgaagaccatcagagtttgaagattcatcagaagctgactgccaaagtctgaagtca 19505385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 23772499 - 23772455
Alignment:
Q  202 gcagaaggaatagaagcctggagcaacaactatttcagaggaatt 246  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||    
T  23772499 gcagaaggaattgaagcctggagcaacgactaattcagaggaatt 23772455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 12541919 - 12541853
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgac 86  Q
    ||||||||||||| |||| ||| | | |||||||||  | ||||||||||||||||||||||||||||    
T  12541919 caaaggaagcttaagttgtaagtcagagtctgaagaa-atcagagtctgaagaccatcagaagctgac 12541853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 18772754 - 18772685
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    ||||||| ||||| ||| || |||||||||||| ||||  ||||||||||| ||||||||| |||||||||    
T  18772754 atcattgtagaag-aatggatgcctggagcaacgactaaatcagaggaatttgaaggcattggatgcttat 18772685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 112506 - 112277
Alignment:
Q  18 gcaaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagac-catcagaagctgactgccagagtctgacgtcatcaagcgtctaa 116  Q
    |||||||||||||||||||||||   | |||||||||| | |||||||||||||  ||||||||||||||||||| ||||||||||||||||||          
T  112506 gcaaaggaagcttatgttgcaagtttgagtctgaagaccatcagagtctgaagattcatcagaagctgactgccaaagtctgacgtcatcaagc------ 112413  T
Q  117 agaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaa 216  Q
               || |||||  ||| ||||||||||||||||||||||||||||||| ||       ||| ||||||||||  ||||||||||||||| ||    
T  112412 -----------atctgaagatcatgagagtctgaagtcaagaagttgcagttagttaaagttagttattatgaagacacaagattgcagaaggaataaaa 112324  T
Q  217 gcctggagcaacaactatttcagaggaattagaaggcattagatgct 263  Q
    ||||  ||||||   |||||| |||||||||||||||||| ||||||    
T  112323 gcctaaagcaacggatatttctgaggaattagaaggcattggatgct 112277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 116116 - 116024
Alignment:
Q  18 gcaaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagac-catcagaagctgactgccagagtctgacgtcatcaag 109  Q
    |||||||||||||||||||||||   | |||||||||| | |||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  116116 gcaaaggaagcttatgttgcaagtttgagtctgaagaccatcagagtctgaagattcatcagaagctgactgccaaagtctgacgtcatcaag 116024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 1683 - 1838
Alignment:
Q  18 gcaaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagac-catcagaagctgactgccagagtctgacgtcatcaagcgtctaa 116  Q
    |||||||||||||||||||||||   | |||||||||| |  ||||||||| ||  ||||||||||||||||||||||| ||||||||||||| |||| |    
T  1683 gcaaaggaagcttatgttgcaagtatgagtctgaagaccataagagtctgatgattcatcagaagctgactgccagagtatgacgtcatcaagtgtctga 1782  T
Q  117 agaccatcagaatttgaagtacatcagagtctgaagtcaagaagttgcagttagtt 172  Q
    |||||| |||| | |||||| |||| |||||| |||| |||||| || ||||||||    
T  1783 agaccagcagagtctgaagttcatctgagtctaaagtgaagaagctggagttagtt 1838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 3372 - 3447
Alignment:
Q  195 catcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||| | ||||||||||||||||| ||||||   |||||||||||||||||||||||||| |||||||||||||    
T  3372 catcatagaagaaggaatagaagcctagagcaatggctatttcagaggaattagaaggcattcgatgcttatccac 3447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 2800 - 2730
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||||||| ||| |||||    
T  2800 atcattgcagaaagaataaaagcctggagcaacgactattttagaggaattggaaggcattggatacttat 2730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 19320362 - 19320454
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    ||||||||||| | ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  19320362 tttgaagacacgtgattgcagaaggaatagaaggctagagcaacagctatttcagaggaattagaaggcattggatgcttatacactgaagaa 19320454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 24440700 - 24440787
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||| ||||| |||| ||||    
T  24440700 attgcagaaggaatagaagcctggagcaactgctatttcagaggaattagaaggcattggatgtttatccactgaagagcgcataaaa 24440787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 270
Target Start/End: Original strand, 21910920 - 21911112
Alignment:
Q  61 gagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagcgtctaaagaccatcagaatttgaagtacatcagagtctgaagtcaagaag 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||                 ||||| ||||||||| |||||||    
T  21910920 gagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaagagtccgaagac-----------------catcaaagtctgaagccaagaag 21911002  T
Q  161 ttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagat 260  Q
     |||| |||||| ||       ||| | |||||||||||    ||||||||||||||||||||||||| || |||| |||| |||||||||||||| |||    
T  21911003 atgcaattagttaaagtttgttattctaaagacacatcaaattagaaggaatagaagcctggagcaacgacgattttagagaaattagaaggcatttgat 21911102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 24157968 - 24157888
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||||    
T  24157968 atcattgtagaaggaatggaagcctggagcaacgactattttagaggaattagaagacattggatgcttatccactgaaga 24157888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 20568275 - 20568200
Alignment:
Q  193 cacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcc 268  Q
    |||||||||| |||||||||||||||||||||||||  |||||| | ||||||||||||||||| |||||||||||    
T  20568275 cacatcattgtagaaggaatagaagcctggagcaacggctattttataggaattagaaggcattggatgcttatcc 20568200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 21846283 - 21846209
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||| ||||| |||||||    
T  21846283 atcattgcagaaggaatggaagcctagagcaacgactatttcaaaggaattagaaggcatttgatgcatatccac 21846209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 22383616 - 22383515
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaa 286  Q
    |||||||| ||||||| ||||||||| ||||||  |||||||  |||||| ||||||||||||||||||| |||||||||||||  |||| |||| ||||    
T  22383616 tgaagacatatcattgtagaaggaatggaagccgtgagcaacggctattttagaggaattagaaggcattggatgcttatccactaaagagcgcataaaa 22383517  T
Q  287 ag 288  Q
    ||    
T  22383516 ag 22383515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 10896391 - 10896475
Alignment:
Q  192 acacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||||||| |||| |||||||| |||||||||||  |||||||||| ||||||||||||||| ||||||||| | |||||||    
T  10896391 acacatcattgtagaaagaatagaatcctggagcaacggctatttcagaagaattagaaggcattggatgcttattcgccgaaga 10896475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 24844270 - 24844204
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgc 262  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||| |||||    
T  24844270 atcattgcagaaagaatagaagcctggagcaacgactatttcagaggagttggaaggcattggatgc 24844204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 25918790 - 25918706
Alignment:
Q  186 ttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    |||||||||||   |||||||||||||||||| |||||||||   |||  ||||||||||||||||||||| |||||||||||||    
T  25918790 ttgaagacacaagtttgcagaaggaatagaagtctggagcaatgtctacatcagaggaattagaaggcattggatgcttatccac 25918706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 14793952 - 14794043
Alignment:
Q  186 ttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    |||||||||||   ||| |||||||| |||||||||||||||| |||||||||||||||||| ||| ||||  |||||||  ||||||||||    
T  14793952 ttgaagacacaaatttgtagaaggaacagaagcctggagcaacgactatttcagaggaattataagacattgcatgcttactcaccgaagaa 14794043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 15668508 - 15668607
Alignment:
Q  186 ttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaa 285  Q
    |||||||||||  | ||||||||||||| |||| || ||||||  |||||||||| |||||| |||||||| ||||||||||||| ||||| || |||||    
T  15668508 ttgaagacacaagactgcagaaggaatataagcttgaagcaacggctatttcagatgaattaaaaggcattggatgcttatccactgaagaccgaagaaa 15668607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 19643654 - 19643732
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaa--caactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    ||||||||||||| ||| |||||||||  ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  19643654 tgcagaaggaatataagactggagcaaaacaactattttagaggaattagaaggcattggatgcttgtccactgaagaa 19643732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 33705980 - 33706049
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||| ||||||||| ||| |||||| |||||||||||| ||||||||||| || |||||||||||||    
T  33705980 tgcagaatgaatagaagactgaagcaacgactatttcagagaaattagaaggctttggatgcttatccac 33706049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 24302931 - 24302998
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||||||||||||| |||||| ||||||||  ||| || ||||||||| ||||||||  |||||||||    
T  24302931 attgcagaaggaatggaagccaggagcaaccgctaatttagaggaatttgaaggcatgggatgcttat 24302998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 15668425 - 15668478
Alignment:
Q  46 gtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctga 99  Q
    |||||||||| | |||||| |||||| ||||||||||||||  |||||||||||    
T  15668425 gtctgaagacaatcagagtatgaagaacatcagaagctgacaaccagagtctga 15668478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 19643534 - 19643563
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactg 88  Q
    ||||||||||||||||||||||||||||||    
T  19643534 cagagtctgaagaccatcagaagctgactg 19643563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 22683558 - 22683493
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    |||||||||| ||  || ||||||| ||||||||| ||||| |||||||||||  |||||||||||    
T  22683558 agaaggaatataaaactagagcaacgactatttcaaaggaaatagaaggcattgaatgcttatcca 22683493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 24440582 - 24440626
Alignment:
Q  63 gtctgaagaccatcagaagctgactgccagagtctgacgtcatca 107  Q
    |||||||||||||||||||||| || |||||  ||||||||||||    
T  24440582 gtctgaagaccatcagaagctgtctaccagaagctgacgtcatca 24440626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 25918894 - 25918854
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactgccagagtctga 99  Q
    ||||||||||||| ||||||||| ||||||||| |||||||    
T  25918894 cagagtctgaagaacatcagaagttgactgccaaagtctga 25918854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 9086 - 9221
Alignment:
Q  18 gcaaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagac-catcagaagctgactgccagagtctgacgtcatcaagcgtctaa 116  Q
    ||||||||||||||||||||||| | | | |||||||| | |||||||||||||  ||||||||||||||||||| ||| |||||||||||||| | | |    
T  9086 gcaaaggaagcttatgttgcaagtcagagcctgaagacaatcagagtctgaagattcatcagaagctgactgccaaagtttgacgtcatcaagcatttga 9185  T
Q  117 agaccatcagaatttgaagtacatcagagtctgaag 152  Q
    ||||||||| | | |||||| ||||||||| |||||    
T  9186 agaccatcaaagtctgaagttcatcagagtatgaag 9221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 9217 - 9293
Alignment:
Q  187 tgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgct 263  Q
    ||||||||||  ||||||||||||||| ||||||  ||||||   |||||| |||||||||||||||||| ||||||    
T  9217 tgaagacacaagattgcagaaggaataaaagcctaaagcaacggatatttctgaggaattagaaggcattggatgct 9293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 850 - 930
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaaga 276  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||    
T  850 atcattgcataaggaatggaagcttggagcaacaactatttcagaggatttagaagacattggatgcttatccactgaaga 930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 288
Target Start/End: Original strand, 11369 - 11612
Alignment:
Q  46 gtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaa-gcgtctaaagaccatcagaatttgaagtacatcaga 144  Q
    |||||||||| |  || ||||||| ||||||| |||||| || |||||  ||| ||||||||| | |||| |||| | ||||||  |||||| || ||||    
T  11369 gtctgaagacaaagagcgtctgaacaccatcaaaagctggctaccagaagctggcgtcatcaaagagtctgaagagcctcagaagctgaagttcaacaga 11468  T
Q  145 gtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaa 244  Q
    |||||||| |  |||| || |||||||| ||       ||||||||  || || |||| ||||||||| ||||||| || |||| ||||||||||| |||    
T  11469 gtctgaagactggaagctggagttagttaaaagttgttattttgaattcatatgattgtagaaggaatggaagcctagaacaacgactatttcagaagaa 11568  T
Q  245 ttagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||| ||||| ||||||||||||  ||||| ||||| |||||    
T  11569 ttagaaagcattggatgcttatccattgaagagcgcaggaaaag 11612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 288
Target Start/End: Original strand, 4086 - 4329
Alignment:
Q  46 gtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctgacgtcatcaa-gcgtctaaagaccatcagaatttgaagtacatcaga 144  Q
    |||||||||| |  || ||||||| ||||||| || ||| || |||||  ||| ||||||||| | |||| |||| | ||||||  |||||| || ||||    
T  4086 gtctgaagacaaagagcgtctgaacaccatcaaaaactggctaccagaagctggcgtcatcaaagagtctgaagagcctcagaagctgaagttcaacaga 4185  T
Q  145 gtctgaagtcaagaagttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaa 244  Q
    |||||||| |  |||| || |||||||| ||       ||||||||  || || |||| ||||||||| ||||||| || |||| ||||||||||| |||    
T  4186 gtctgaagactggaagctggagttagttaaaagttgttattttgaattcatatgattgtagaaggaatggaagcctagaacaacgactatttcagaagaa 4285  T
Q  245 ttagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||| ||||| ||||||||||||  ||||| ||||| |||||    
T  4286 ttagaaagcattggatgcttatccattgaagagcgcaggaaaag 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 20205 - 20116
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||||||||||||| ||||||| ||||||| ||||||||||| ||||||||| ||||| ||||||||||||  ||||| ||||| |||||    
T  20205 attgcagaaggaatggaagcctagagcaacgactatttcagaagaattagaaagcattggatgcttatccattgaagagcgcaggaaaag 20116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 59695 - 59606
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcagaaaaag 288  Q
    |||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||  ||||| || ||||||||    
T  59695 attgtagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatggttatccaatgaagagcgtagaaaaag 59606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 3280 - 3355
Alignment:
Q  200 ttgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaag 275  Q
    |||||||||||||| ||| |||||||||  ||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  3280 ttgcagaaggaataaaagtctggagcaatgactatttcagaggaatttgaaggcattggatgcttatccacagaag 3355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 844 - 773
Alignment:
Q  196 atcattgcagaaggaata-gaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| ||||  |||||||| |||||||||    
T  844 atcattgcagaaggaataagaagcctggagcaacgactatttcagagaaattgaaaggcattggatgcttat 773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 416028 - 416080
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcatt 256  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  416028 agaaggaatagaagcctggagcaacgactatttcaaatgaattagaaggcatt 416080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 1566 - 1524
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaatt 246  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  1566 agaaggaatagaagccaggagcaacgactatttcagaggaatt 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 288
Target Start/End: Original strand, 10241 - 10468
Alignment:
Q  63 gtctgaagaccatcagaagctgactgccagagtctgacgtcatca-agcgtctaaaga-ccatcagaatttgaagtacatcagagtctgaagtcaagaag 160  Q
    |||||||||||||||||||||| || |||||  |||||||||||  || |||| |||| |||| ||||  || ||| ||||||||||| ||| |  ||||    
T  10241 gtctgaagaccatcagaagctgtctaccagaagctgacgtcatcggagagtctgaagaaccattagaagctggagttcatcagagtctaaagactggaag 10340  T
Q  161 ttgcagttagttgaannnnnnnattttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagat 260  Q
     || |||||||| ||       ||| | ||  || |||||||| ||||||||  |||||  ||||||| |||||||||||| |||||||||||||| |||    
T  10341 ctgaagttagttaaatgttgttattcttaatgcatatcattgcggaaggaatgcaagccgagagcaacgactatttcagagaaattagaaggcattggat 10440  T
Q  261 gcttatccaccgaagaacgcagaaaaag 288  Q
    | |||||||| ||| | ||||| |||||    
T  10441 gtttatccactgaaaagcgcaggaaaag 10468  T

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Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 29936 - 29867
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttat 266  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||||| |||||||||    
T  29936 atcattgcagaag-aatagaagcctggagcaacgactaattcagatgaattggaaggcattggatgcttat 29867  T

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Target: scaffold1107 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 2339 - 2411
Alignment:
Q  205 gaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    ||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||| |||||||| |||| ||||||    
T  2339 gaaggaatataagactgaagcaacgactattttagaggaattagaaggcattggatgcttacccactgaagaa 2411  T

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Target: scaffold0683 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 658 - 578
Alignment:
Q  19 caaaggaagcttatgttgcaagacggggtctgaagactaccagagtctgaagaccatcagaagctgactgccagagtctga 99  Q
    ||||| |||||||||||| ||| | | |||||||||| | || ||| |||||| |||||||||||||||||||||||||||    
T  658 caaagcaagcttatgttgaaagtcagagtctgaagaccatcaaagtttgaagaacatcagaagctgactgccagagtctga 578  T

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Target: scaffold0683; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 508 - 456
Alignment:
Q  204 agaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcatt 256  Q
    |||||||||| |||||| ||||||| || ||||||||||||||||||||||||    
T  508 agaaggaataaaagcctagagcaacgacaatttcagaggaattagaaggcatt 456  T

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Target: scaffold0388 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 5529 - 5445
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatcca 269  Q
    ||||||||||||   ||||||| |||||||||||||||||||||  ||| |||||||||||| ||||||||| |||  |||||||    
T  5529 tttgaagacacaagtttgcagatggaatagaagcctggagcaacggctaattcagaggaatttgaaggcattggatatttatcca 5445  T

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Target: scaffold0490 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 7461 - 7378
Alignment:
Q  199 attgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaacgcag 282  Q
    |||||||||||||| ||||||| || || | ||||||||||| ||||||||| ||||| ||||||||||||  ||||| |||||    
T  7461 attgcagaaggaatggaagcctagaacagcgactatttcagaagaattagaaagcattggatgcttatccattgaagagcgcag 7378  T

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Target: scaffold0067 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 16400 - 16471
Alignment:
Q  206 aaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccaccgaagaa 277  Q
    |||||||||||| ||| |||||| ||||||| |||| |||||||||||||| |||||||| |||| ||||||    
T  16400 aaggaatagaagactgaagcaacgactattttagagaaattagaaggcattggatgcttacccactgaagaa 16471  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 1813 - 1882
Alignment:
Q  201 tgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||| ||||||  || ||  ||||||||||||||| ||||||||||||||| |||||||||    
T  1813 tgcagaaggaataaaagcctaaagaaatgactatttcagaggaaatagaaggcattagatacttatccac 1882  T

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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 8233 - 8151
Alignment:
Q  185 tttgaagacacatcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||||||||   |||||||||||||||    ||| |||||| | ||||||||||||||||||||||||| |||| ||||||||    
T  8233 tttgaagacacaagtttgcagaaggaatagt---ctgaagcaacgattatttcagaggaattagaaggcattggatgattatccac 8151  T

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Target: scaffold0092; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 8323 - 8278
Alignment:
Q  59 cagagtctgaagaccatcagaagctgactgccagagtctgacgtca 104  Q
    |||||||||||||||||||||||||||| | |||||| ||| ||||    
T  8323 cagagtctgaagaccatcagaagctgacagtcagagtatgaagtca 8278  T

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Target: scaffold1026 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 3107 - 3033
Alignment:
Q  196 atcattgcagaaggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagatgcttatccac 270  Q
    ||||||| |||||| || ||||| || |||||| ||| ||| ||||||||||||| ||||| |||||||||||||    
T  3107 atcattgtagaaggtatggaagcttgaagcaacgactgttttagaggaattagaatgcattggatgcttatccac 3033  T

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Target: scaffold1026; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 3254 - 3205
Alignment:
Q  37 caagacggggtctgaagactaccagagtctgaagaccatcagaagctgac 86  Q
    |||||| | |||||||||| |  |||||||||||||||||||||||||||    
T  3254 caagacagagtctgaagacaaagagagtctgaagaccatcagaagctgac 3205  T

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