View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_66 (Length: 272)
Name: NF14819_high_66
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_66 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 39857577 - 39857302
Alignment:
| Q |
1 |
tttgattttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttcgctttggtggc----agttatgttggaaggcttattgtgaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
39857577 |
tttgattttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttccctttggtggctggcagttatgttggaaggcttattgtgaa |
39857478 |
T |
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| Q |
97 |
ctgtaaggataagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgt |
196 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39857477 |
ctgtaaggataagccatcagatatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgt |
39857378 |
T |
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| Q |
197 |
ctgactttttatttttcttatgaaaaacttcataaaagtttaaatttgcaaggtatccttgcatatttagaaacca |
272 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39857377 |
ctgactttatatttttctgctgaaaaacttcataaaagtttaaatttgcaaggtatccttgcatatttagaaacca |
39857302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 39911113 - 39910910
Alignment:
| Q |
6 |
ttttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttcgctttggtggcagttatgttggaaggcttattgtgaactgtaagga |
105 |
Q |
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||||||||||||||| |||||||| |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||| ||||||| || |
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| T |
39911113 |
ttttaacatatgttggggtaaaagatggaccttagttgacatcaaatgtatttccctttgatggcagttatgttggaaggctccttgtaaactgtactga |
39911014 |
T |
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| Q |
106 |
taagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgtctgactttt |
205 |
Q |
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|||||||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||| || | |
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| T |
39911013 |
taagccatcacaaatcttaacaaagttaaataaattggctggttatgatcctgatgaagagattgaactatacgaggttggtttgtgttgtctgatttat |
39910914 |
T |
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| Q |
206 |
tatt |
209 |
Q |
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|||| |
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| T |
39910913 |
tatt |
39910910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 39898321 - 39898108
Alignment:
| Q |
31 |
tggaccatagttgacatcatatgtatttcgctttggtggcagttatgttggaaggcttattgtgaactgtaaggataagccatcagacatcttggcaagg |
130 |
Q |
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|||||| ||||||| |||| ||||||||| |||| ||||||||||||||||||||| |||||||||||| | ||| |||||||| ||||| |||| |
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| T |
39898321 |
tggaccttagttgatatcaaatgtatttccatttgatggcagttatgttggaaggctctttgtgaactgtaccggtaaaccatcagaaatcttaacaagt |
39898222 |
T |
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| Q |
131 |
ttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgtctgactttttatttttcttatgaaaaacttcata |
230 |
Q |
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| T |
39898221 |
ttaaataatttggctggttttgatcctgatgaagagattgaactttatgaggttggtatttcttgcctgattttttatttatctgttgtgcaacttcata |
39898122 |
T |
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| Q |
231 |
aaagtttaaatttg |
244 |
Q |
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||| |||||||||| |
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| T |
39898121 |
aaaatttaaatttg |
39898108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 39847742 - 39847556
Alignment:
| Q |
3 |
tgattttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttcgctttggtggcagttatgttggaaggcttattgtgaactgtaa |
102 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||| ||||||||||| ||||||||| |||| |||||| |
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| T |
39847742 |
tgattttaacatatgttgcggtaaaaggtggactttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtac |
39847643 |
T |
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| Q |
103 |
ggataagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggttt |
189 |
Q |
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| ||| |||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
39847642 |
tggtaaaccatcagaaatcttaacaaagttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggttt |
39847556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 39864762 - 39864560
Alignment:
| Q |
7 |
tttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttcgctttggtggcagttatgttggaaggcttattgtgaactgtaaggat |
106 |
Q |
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||||||||||||| |||||| |||||||| ||||||| | ||||||||| |||| ||||||||||| ||||||| | |||||||||||| ||| |
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| T |
39864762 |
tttaacatatgttctggtaaacggtggaccttagttgattcgaaatgtatttcccttta-tggcagttatgctggaaggttctttgtgaactgtactgat |
39864664 |
T |
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| Q |
107 |
aagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgtctgacttttt |
206 |
Q |
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||||||||||| ||||| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| || || |
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| T |
39864663 |
aagccatcagaaatcttaactagcttaaataaattggctggttatgatcctgatgaagagattgaactttatgaggttggtttgttttgtctgatttatt |
39864564 |
T |
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| Q |
207 |
attt |
210 |
Q |
| |
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|||| |
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| T |
39864563 |
attt |
39864560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 37466168 - 37465975
Alignment:
| Q |
6 |
ttttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttcgctttggtggcagttatgttggaaggcttattgtgaactgtaagga |
105 |
Q |
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||||||||||| ||| |||| ||| |||||| ||||||||||| |||| |||| ||||| |||||||| |||||| || || ||||||| | | |
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| T |
37466168 |
ttttaacatatattggggtagaagatggacctgagttgacatcaaatgtttttccctttgatggcagttttgttggcagactctttgtgaataacactgg |
37466069 |
T |
|
| Q |
106 |
taagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgtctg |
199 |
Q |
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||| |||||||| ||||| ||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||| |
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| T |
37466068 |
taaaccatcagaaatcttagcaaggttaaataaaatggctggttatgatcctgaagaagagattggactttatgaggttggtttctgttgtctg |
37465975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 39736150 - 39736347
Alignment:
| Q |
3 |
tgattttaacatatgttgaggtaaaaggtggaccatagttgacatcatatgtatttcgctttggtggcagttatgttggaaggcttattgtgaactgtaa |
102 |
Q |
| |
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||||||||| || ||||| ||| |||||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||| |||| |||||| | |
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| T |
39736150 |
tgattttaatatttgttggtgtacaaggtggacctgagttgacttcaaatgtattttccttctatggcagttatgttggaaggctctttgttaactgtta |
39736249 |
T |
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| Q |
103 |
ggataagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggtttttgttgtctga |
200 |
Q |
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||| || |||| || || |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||| |
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| T |
39736250 |
tagtaacccgtcagcaattttagcaaggataaataaattggctggttatgatcttgatgaagagattgaactttatgaggttagtttgtgttgtctga |
39736347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 36059213 - 36059335
Alignment:
| Q |
67 |
tggcagttatgttggaaggcttattgtgaactgtaaggataagccatcagacatcttggcaaggttaaataaattggctggttatgatcctaatgaagag |
166 |
Q |
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|||||| |||||||||||||| ||||||| |||| | ||||||||||| ||||| ||||| ||||| || |||||||||||| |||| | ||||| |
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| T |
36059213 |
tggcagctatgttggaaggctctttgtgaagtgtactggcaagccatcagaaatcttaacaaggctaaatgaaatggctggttatgttcctgaagaagat |
36059312 |
T |
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| Q |
167 |
attgaactttatgaggttggttt |
189 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
36059313 |
attgtactttatgaggttggttt |
36059335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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