View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_70 (Length: 257)
Name: NF14819_high_70
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38188869 - 38188629
Alignment:
| Q |
1 |
ttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaaatttgttttaccttgtaggtatatcaatatggt |
100 |
Q |
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| T |
38188869 |
ttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaaatttgttttaccttgtaggtatatcaatatggt |
38188770 |
T |
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| Q |
101 |
ttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgaggtagttagtttacagtctgat |
200 |
Q |
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| T |
38188769 |
ttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgaggtagttagtttacagtctgat |
38188670 |
T |
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| Q |
201 |
tgaatccaattttactggtttgtcatgttttgttctataat |
241 |
Q |
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| T |
38188669 |
tgaatccaattttactggtttgtcatgttttgttctataat |
38188629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 16184214 - 16184128
Alignment:
| Q |
97 |
tggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgaggtag |
183 |
Q |
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| T |
16184214 |
tggtttcttgctattatatattttatttctggtgttccagcatcctatgtgatgtggtatcgccctctttatcgcgctatgaggtag |
16184128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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