View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_high_74 (Length: 252)

Name: NF14819_high_74
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_high_74
NF14819_high_74
[»] chr4 (10 HSPs)
chr4 (1-245)||(52984821-52985065)
chr4 (66-222)||(55658397-55658557)
chr4 (67-214)||(55636232-55636379)
chr4 (2-188)||(55664567-55664748)
chr4 (2-180)||(51315974-51316149)
chr4 (2-148)||(54861404-54861547)
chr4 (66-208)||(55620047-55620193)
chr4 (66-208)||(55627351-55627497)
chr4 (74-163)||(54628043-54628132)
chr4 (68-128)||(3671556-3671616)
[»] chr8 (1 HSPs)
chr8 (68-209)||(9890561-9890703)
[»] chr2 (1 HSPs)
chr2 (12-185)||(13402638-13402809)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 52984821 - 52985065
Alignment:
Q  1 tctctcttttcccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgattatgggtcagcaggctcaaaaggcatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52984821 tctctcttttcccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgattatgggtcagcaggctcaaaaggcatga 52984920  T
Q  101 gagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtgacacattagatgaaaaaatacaaggggcgagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52984921 gagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtgacacatgagatgaaaaaatacaaggggcgagaa 52985020  T
Q  201 gagactagattcataataataataaatagtagtgactcacctatg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52985021 gagactagattcataataataataaatagtagtgactcacctatg 52985065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 55658397 - 55658557
Alignment:
Q  66 ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg 165  Q
    ||||| || ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  55658397 ttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacagg 55658496  T
Q  166 tgacaca---ttagatga-aaaaatacaaggggcgagaagagactagattcataataataa 222  Q
    |||||||   | |||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  55658497 tgacacatattgagatgacaaaaagacaaggggtgagaagagactagattcataataataa 55658557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 55636379 - 55636232
Alignment:
Q  67 tgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggt 166  Q
    |||||||||  |||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  55636379 tgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggt 55636280  T
Q  167 gacacattagatgaaaaaatacaaggggcgagaagagactagattcat 214  Q
    | ||||| |||||| | ||||||||  | |||||||||||||||||||    
T  55636279 ggcacatgagatgacataatacaagcagtgagaagagactagattcat 55636232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 55664567 - 55664748
Alignment:
Q  2 ctctcttttcccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgattatgggtcagcaggctcaaaaggcatgag 101  Q
    |||||| || |||||||| ||||| ||||||||| ||||| ||| | | |||||||| ||||    ||||  ||| |||| ||| ||||||||||||| |    
T  55664567 ctctctgtttccagctgtaatgttggatatagtcaagcaagcttctttcttaatacttttatc---gtgaaaatgtgtcaacagactcaaaaggcatggg 55664663  T
Q  102 agtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtgacacattagatgaaaaaatac 188  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||  ||||||||| |||||| |||||||    
T  55664664 agtgaaccatgattgataatagcctgacaaaaagagtctcaccaaatcaagttattctcac--gtgacacatgagatgacaaaatac 55664748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 51316149 - 51315974
Alignment:
Q  2 ctctcttttcccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgattatgggtcagcaggctcaaaaggcatgag 101  Q
    |||||| || |||||||| |||||||||| ||||| |||| ||| |   |||||||| || ||   ||||| |||||||| ||||||||||||||||  |    
T  51316149 ctctctgttaccagctgtaatgtttgatacagtcctgcaagcttcttgcttaatacttttgtt---gtgatcatgggtcaacaggctcaaaaggcattgg 51316053  T
Q  102 agtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtgacacattagatga 180  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||  ||||||||||||| ||||||    
T  51316052 agtgaaccatgattgataacaacctgacaaaaagagccccaccaaatcaggttattcaaacaggtgacacatgagatga 51315974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 54861404 - 54861547
Alignment:
Q  2 ctctcttttcccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgattatgggtcagcaggctcaaaaggcatgag 101  Q
    |||||| || |||||||| |||||||| | |||||||||||||| | | |||||||| || ||   |||| ||  ||||| ||||||||||||||||| |    
T  54861404 ctctctgtttccagctgtaatgtttgacacagtccagcaaacttctttcttaatacttttctt---gtgactactggtcaacaggctcaaaaggcatggg 54861500  T
Q  102 agtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54861501 agtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat 54861547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 55620047 - 55620193
Alignment:
Q  66 ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg 165  Q
    ||||| || ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  55620047 ttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacagg 55620146  T
Q  166 tgacaca---ttagatga-aaaaatacaaggggcgagaagagactag 208  Q
    |||||||   | |||||| ||||| |||||||| |||||||||||||    
T  55620147 tgacacatattgagatgacaaaaagacaaggggtgagaagagactag 55620193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 55627351 - 55627497
Alignment:
Q  66 ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg 165  Q
    ||||| || ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  55627351 ttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacagg 55627450  T
Q  166 tgacaca---ttagatga-aaaaatacaaggggcgagaagagactag 208  Q
    |||||||   | |||||| ||||| |||||||| |||||||||||||    
T  55627451 tgacacatattgagatgacaaaaagacaaggggtgagaagagactag 55627497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 54628132 - 54628043
Alignment:
Q  74 atgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcaca 163  Q
    |||||||| |||||||||||| |||| |||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||    
T  54628132 atgggtcaacaggctcaaaagacatgggagtaaaccatgattgacaatagcctgacaaaaagaatcctaccaaatcaggtaattctcaca 54628043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 3671556 - 3671616
Alignment:
Q  68 gtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctga 128  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||    
T  3671556 gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgacaatagcctga 3671616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 9890703 - 9890561
Alignment:
Q  68 gtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtg 167  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  9890703 gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgagaatagcctgacaaaaagagtcccacaaaatcaggtaattctcacaagtg 9890604  T
Q  168 acacattaga-tgaaaaaatacaaggggcgagaagagactaga 209  Q
    |||||| ||| ||| | ||||||||||| ||||||||||||||    
T  9890603 acacatgagattgacataatacaaggggtgagaagagactaga 9890561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 13402809 - 13402638
Alignment:
Q  12 ccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccat 111  Q
    |||||||| ||||||||||||||||||||| ||| | | |||||||| || ||   |||||||||||||| |||||||||||| |||| |||||||||||    
T  13402809 ccagctgtaatgtttgatatagtccagcaagcttctttcttaatacttttctt---gtgattatgggtcaacaggctcaaaagacatgggagtgaaccat 13402713  T
Q  112 gattgataatagcctgacaaaaagagtccc-accaaatcaggtaattctcacaggtgacacattagatgaaaaaa 185  Q
    ||   ||||||||||||||||||||||||| || ||||||| ||| ||||| ||||||  ||| |||||| ||||    
T  13402712 gaccaataatagcctgacaaaaagagtcccaacaaaatcagataactctcaaaggtgatgcatgagatgacaaaa 13402638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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