View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_76 (Length: 250)
Name: NF14819_high_76
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_76 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 43763782 - 43763846
Alignment:
| Q |
18 |
ataggaggtgagcgtgtggaggaaattagcagtgagtattcaggtccagctaaatccaaatcaat |
82 |
Q |
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| T |
43763782 |
ataggaggtgagcgtgtggaggaaattagcagtgagtattcaggtccagctaaatccaaatcaat |
43763846 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 43763949 - 43764002
Alignment:
| Q |
176 |
aaggaagaaatatcacaggcacacttctgaacagatcagagtcatggaagcgtg |
229 |
Q |
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| T |
43763949 |
aaggaagaaatatcacaggcacacttctgaacagatcagagtcatggaagcgtg |
43764002 |
T |
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