View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_78 (Length: 249)
Name: NF14819_high_78
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_78 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1959579 - 1959809
Alignment:
| Q |
1 |
gtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatctta |
100 |
Q |
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| T |
1959579 |
gtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatctta |
1959678 |
T |
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| Q |
101 |
atcactgctgtcctcttacttgatggaatgctacaaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaa |
200 |
Q |
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| T |
1959679 |
atcactgctgtcctcttacttgatggaatgctacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaa |
1959778 |
T |
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| Q |
201 |
tcttgaaatatggcaaaagagaagttccatc |
231 |
Q |
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| T |
1959779 |
tcttgaaatatggcaaaagagaagttccatc |
1959809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 2023612 - 2023516
Alignment:
| Q |
135 |
aaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatc |
231 |
Q |
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| T |
2023612 |
aaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttccatc |
2023516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 2023897 - 2023807
Alignment:
| Q |
39 |
acatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaat |
129 |
Q |
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| T |
2023897 |
acatgatgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaattgttgctgtcctctgacttgatggaat |
2023807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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