View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_80 (Length: 243)
Name: NF14819_high_80
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_80 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5508058 - 5508293
Alignment:
| Q |
1 |
atcaaataacatgttaagcaaatgattaatatatttcttaagcaaatgacatgttagaatg--------caaatttagaggattnnnnnnncaacaattt |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
5508058 |
atcaaataacatgttaagcaaatgattaatatatttcttaagcaaatgacatgttagaatgattgaatgcaaatttagaggattaaaaaaacaacaattt |
5508157 |
T |
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| Q |
93 |
tgccaagaatgttgttatgatgttgtctgcaaagtacatgtaagtgtcattggaacccaacaatagttaattgctactagaggaatggttgttaattgcc |
192 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5508158 |
tgccaaaaatgttgttataatgttgtctgcaaagtacatgtaactgtcattggaacccaacaatagttaattgctattagaggaatggttgttaactgcc |
5508257 |
T |
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| Q |
193 |
attggaggcgaatgacagttaactaccgggtgtatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5508258 |
attggaggcgaatgacagttaactaccgggtgtatt |
5508293 |
T |
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