View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_85 (Length: 236)
Name: NF14819_high_85
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_85 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 6250043 - 6250245
Alignment:
| Q |
16 |
aaaatcaaattgtttccatcaacatggggacaaaagcccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6250043 |
aaaatcaaattgtttccatcaacatggggacaaaagcccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttca |
6250142 |
T |
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| Q |
116 |
caaattccagattttgatcaaatatggtggctctcatcagttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6250143 |
caaattccagattttgatcaaatatggtggctctcatcagttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaag |
6250242 |
T |
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| Q |
216 |
ttg |
218 |
Q |
| |
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||| |
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| T |
6250243 |
ttg |
6250245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 39428177 - 39427975
Alignment:
| Q |
16 |
aaaatcaaattgtttccatcaacatggggacaaaagcccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39428177 |
aaaatcaaattgtttccatcaacatggggacaaaagcccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttca |
39428078 |
T |
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| Q |
116 |
caaattccagattttgatcaaatatggtggctctcatcagttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaag |
215 |
Q |
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| T |
39428077 |
caaattccagattttgatcaaatctggtggctctcatcagttgctgcagtcatgtctttcacatattccctaattggtctagcacttggaattgccaaag |
39427978 |
T |
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| Q |
216 |
ttg |
218 |
Q |
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||| |
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| T |
39427977 |
ttg |
39427975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 44315775 - 44315611
Alignment:
| Q |
54 |
catgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctcatc |
153 |
Q |
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|||||||||| |||||||| | ||||||||| ||||| || || ||||||||| |||| |||||||||||||||||| |||| |||||||||||| |
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| T |
44315775 |
catgtcacatttcaagcaatccatacatgatagcatttggagtaatccaaattttcttttctcaaattccagattttgataaaatgtggtggctctcaat |
44315676 |
T |
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| Q |
154 |
agttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttg |
218 |
Q |
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| T |
44315675 |
agttgcagcaatcatgtctttcacctattcctttattggccttggactagcaattgccaaagttg |
44315611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 44323711 - 44323547
Alignment:
| Q |
54 |
catgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctcatc |
153 |
Q |
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||||||| || ||| |||||| ||||||||| ||||| ||| |||| |||||||||| ||||||||||||||| || | || |||||||||||| |
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| T |
44323711 |
catgtcatatttcaggcaacccatacatgattgcttttggcgtggcacaacttttcctttctcaaattccagattttcataacatgtggtggctctcaat |
44323612 |
T |
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| Q |
154 |
agttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttg |
218 |
Q |
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|||||||||| ||||||||||| || ||| ||||| ||| |||||||||||| ||||||||| |
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| T |
44323611 |
agttgctgcagtcatgtctttcttctactccacaattgctcttgctcttggaatttccaaagttg |
44323547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 40204242 - 40204276
Alignment:
| Q |
116 |
caaattccagattttgatcaaatatggtggctctc |
150 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40204242 |
caaattccagattttgatcaaatatggtggctctc |
40204276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 40200741 - 40200775
Alignment:
| Q |
116 |
caaattccagattttgatcaaatatggtggctctc |
150 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
40200741 |
caaattccagattttgatcaattatggtggctctc |
40200775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 44306237 - 44306139
Alignment:
| Q |
53 |
ccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctca |
151 |
Q |
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||||||||||| |||||||||| |||||||||| ||||| || || |||||||| |||| ||||||||||| ||| || | | |||||||||||| |
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| T |
44306237 |
ccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtggctctca |
44306139 |
T |
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