View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_88 (Length: 231)
Name: NF14819_high_88
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_88 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 26633372 - 26633572
Alignment:
| Q |
20 |
aatccatcagcatgataaaaaggtttcaaatagtcattttcaactgtattgtcgaaagtagtaagaaattgtgaatatgtgataagaaactcaaagacac |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
26633372 |
aatccatcagcatgataaaaatatttcaaatagtcattttcaactgtattgttggaagtggtaagatattgtgaatatgtgataagaaactcaaagacac |
26633471 |
T |
|
| Q |
120 |
aaaaataatattatgactgctaggattggt----gagagagagttagaaagactgctaggataaatattcaagtccagtggttggttctgtgctagtata |
215 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26633472 |
--aaataatattatgcttgctaggattggtgagagagagagagttagaaagactgctaggataaatattcaagtccagtggttggttctgtgctagtata |
26633569 |
T |
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| Q |
216 |
atc |
218 |
Q |
| |
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||| |
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| T |
26633570 |
atc |
26633572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 26739348 - 26739548
Alignment:
| Q |
20 |
aatccatcagcatgataaaaaggtttcaaatagtcattttcaactgtattgtcgaaagtagtaagaaattgtgaatatgtgataagaaactcaaagacac |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
26739348 |
aatccatcagcatgataaaaatatttcaaatagtcattttcaactgtattgttggaagtggtaagatattgtgaatatgtgataagaaactcaaagacac |
26739447 |
T |
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| Q |
120 |
aaaaataatattatgactgctaggattggt----gagagagagttagaaagactgctaggataaatattcaagtccagtggttggttctgtgctagtata |
215 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26739448 |
--aaataatattatgcttgctaggattggtgagagagagagagttagaaagactgctaggataaatattcaagtccagtggttggttctgtgctagtata |
26739545 |
T |
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| Q |
216 |
atc |
218 |
Q |
| |
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||| |
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|
| T |
26739546 |
atc |
26739548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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