View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_high_9 (Length: 534)
Name: NF14819_high_9
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38791316 - 38791077
Alignment:
| Q |
1 |
catcgcagtcccacaacttcaactaggatcagagtcatggacacattttcaatctttgtttttcccgtaatgactgcaccctcatggtttctaacgatta |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38791316 |
catcgcagtcccacaacttcgactaggatcagagtcatggacacattttcaatctttgtttttcccgtaatgactgcaccctcatggtttctaacgatta |
38791217 |
T |
|
| Q |
101 |
tactccaacatgtttgtcgtctacaaagcaacccgcatcaatattaattttcaaaacacccaaaggagggcttttccaacctgttgagtactctggtata |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38791216 |
gactccaacatgtttgtcgtctacaaaacaacccgcatcaatattaattttcaaaacacccaaaggagggcttttccaacctgtcgagtactctggtata |
38791117 |
T |
|
| Q |
201 |
gactctaccaaatttgtcccagctcatccaataatacata |
240 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||| |
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| T |
38791116 |
ggctctaccaaatttgtcccatctcatccaataatacata |
38791077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 6456538 - 6456479
Alignment:
| Q |
223 |
ctcatccaataatacatatatgtaattacaagtcttcacaataacaacattttagcttga |
282 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
6456538 |
ctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttga |
6456479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 6760309 - 6760368
Alignment:
| Q |
223 |
ctcatccaataatacatatatgtaattacaagtcttcacaataacaacattttagcttga |
282 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
6760309 |
ctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttga |
6760368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 407095 - 407048
Alignment:
| Q |
215 |
tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca |
262 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
407095 |
tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca |
407048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 416847 - 416894
Alignment:
| Q |
215 |
tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca |
262 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
416847 |
tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca |
416894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 20786033 - 20785842
Alignment:
| Q |
7 |
agtcccacaacttcaactaggatcagagtcatggacacattttcaatctttgtttttcccgtaatgactgcaccctcatggtttctaacgattatactcc |
106 |
Q |
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|
||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| | || || |
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| T |
20786033 |
agtcccacaacttcagctaggattggagtcatggacacattttcaatctttctttttgccgtaatgaccgcaccctcatggtttctaacgatcagacccc |
20785934 |
T |
|
| Q |
107 |
aacatgtttg-tcgtctacaaagcaacccgcatcaatattaattttcaaaacacccaaaggagggcttttccaacctgttgagtactctggtatagactc |
205 |
Q |
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||||||| || | ||| ||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
20785933 |
aacatgtgtgcccatcttcaaagcatctcgcatc---------tttcaaaacacccaaaggagggcttttccaaccttttgaggactctggtataggctc |
20785843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 24183578 - 24183531
Alignment:
| Q |
215 |
tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca |
262 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
24183578 |
tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca |
24183531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 15046506 - 15046315
Alignment:
| Q |
7 |
agtcccacaacttcaactaggatcagagtcatggacacattttcaatctttgtttttcccgtaatgactgcaccctcatggtttctaacgattatactcc |
106 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| || | || || |
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| T |
15046506 |
agtcccacaacttcagctaggattggagtcatggacacattttcaatctttctttttgccgtaatgaccgcaccctcatggtttctaacaatcagacccc |
15046407 |
T |
|
| Q |
107 |
aacatgtttg-tcgtctacaaagcaacccgcatcaatattaattttcaaaacacccaaaggagggcttttccaacctgttgagtactctggtatagactc |
205 |
Q |
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||||||| || | ||| ||||||| | |||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||| |
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| T |
15046406 |
aacatgtgtgcccatcttcaaagcatctcgcatc---------tttcaaaacacccaaaggatggcttttccaaccttttgaggactctggtataggctc |
15046316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 39676189 - 39676130
Alignment:
| Q |
223 |
ctcatccaataatacatatatgtaattacaagtcttcacaataacaacattttagcttga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |
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|
| T |
39676189 |
ctcatccaataatacatatatgtaattacaagacttcacagtaacaacattttagtttga |
39676130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 24346430 - 24346477
Alignment:
| Q |
215 |
tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca |
262 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
24346430 |
tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca |
24346477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 24358702 - 24358749
Alignment:
| Q |
215 |
tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca |
262 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
24358702 |
tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca |
24358749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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